1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcagtgaacttgttcttgttgacataagaaagcaccacaatttcattttttttctgcagtgaaaacttagttcaatttttaatattttctgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACATCTCCTGCAACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAG
species | Zea mays |
transcript | GRMZM2G121223_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACAEST: gi|211268353|gb|FL138204.1|FL138204
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: GACGATGATGCCGCTGCTACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGEST: gi|71772130|gb|DR970067.1|DR970067
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGG
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACAEST: gi|211265928|gb|FL138201.1|FL138201
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTT-GAGGGTGAGCATGATACAGTCACTGAGAAGGAEST: gi|148969662|gb|EE020526.2|EE020526
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGA
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACAEST: gi|71433771|gb|DR814821.1|DR814821
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACAEST: gi|76018553|gb|DT945723.1|DT945723
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACAEST: gi|211268355|gb|FL138206.1|FL138206
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATEST: gi|149104717|gb|EE290166.2|EE290166
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCAT
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACAEST: gi|148967941|gb|EE019253.2|EE019253
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACAEST: gi|148972136|gb|EE023006.2|EE023006
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACAEST: gi|31998159|gb|CD661958.1|CD661958
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
attttttttctgcagtgaaaacttagttcaatttttaatattttctgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACATCTCCTGCAACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAG
ttctgat putative branch site (score: 3)
tattttct CT-rich tract
tgaaaacttagttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcagtgaacttgttcttgttgacataagaaagcaccacaatttcattttttttctgcagtgaaaacttagttcaatttttaatattttctgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACATCTCCTGCAACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
tgcagtg
- - - - - - - - ttgttga
- - - - - - - - - - - - ataagaaa
- - - - - - - - - - - - - - - - -caccaca