1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgtactatatatccattcttctcttctgcttgaatttctctaggcctccagctgcagagctacatgcatattcattctttattaatttcttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGTGTTGTTACATGCCATCCGAATGGTAACACTGATGGATGCGAAGAAACT
species | Zea mays |
transcript | GRMZM2G121176_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|28873541|gb|CB329517.1|CB329517
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|211077311|gb|FK959778.1|FK959778
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|211080039|gb|FK959782.1|FK959782
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCG-CGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|211077306|gb|FK959773.1|FK959773
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|148982023|gb|EE028075.2|EE028075
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|149112709|gb|EE295543.2|EE295543
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|149073356|gb|EE161654.2|EE161654
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|211077308|gb|FK959775.1|FK959775
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|148942669|gb|EC887690.2|EC887690
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|211077310|gb|FK959777.1|FK959777
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|211077309|gb|FK959776.1|FK959776
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|76912446|gb|DV164736.1|DV164736
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|149095505|gb|EE181161.2|EE181161
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|211077300|gb|FK959767.1|FK959767
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|32826748|gb|CD966426.1|CD966426
genomic: TCGGCGGCGCGCCGCCGGTGGGATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: GATCTCACCAACAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGEST: gi|32827088|gb|CD966766.1|CD966766
genomic: GATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
EST: GATCTTACCANCAAGGGGGCCGAGAGCAC CCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
genomic: GATCTCACCAACAAGGGGGCCGAGAGCACgtaatgccca ... ttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGG
cctccagctgcagagctacatgcatattcattctttattaatttcttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGTGTTGTTACATGCCATCCGAATGGTAACACTGATGGATGCGAAGAAACT
tattaat putative branch site (score: 2)
ttctttattaatttct CT-rich tract
atattcattctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtactatatatccattcttctcttctgcttgaatttctctaggcctccagctgcagagctacatgcatattcattctttattaatttcttttctgcagCCCAATTTTGAAAGATGCTGTGGAAATATCTACAGATGAAGAATCAGATGGTGTTGTTACATGCCATCCGAATGGTAACACTGATGGATGCGAAGAAACT
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