1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccgctcgtggggacgggtggtttcgtgtatagtttgagttgttaggcaccatgcaggcgtctttccgtcccgcgacgatcaggtctgtttgctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCTGCCGCGGATAATCGGCAGGGATTTGGCACCGGCCGTGGCGCCGTTTTC
species | Zea mays |
transcript | GRMZM2G120857_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCGAACCCTTTGTGAATCTTCGTTGTCCG GGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCEST: gi|148932534|gb|EC876336.2|EC876336
genomic: TGCGAACCCTTTGTGAATCTTCGTTGTCCGgtacattccc ... gctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
EST: TGCGAACCCTTTGTGAATCTTCGTTGTCCG GGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCEST: gi|149101023|gb|EE187121.2|EE187121
genomic: TGCGAACCCTTTGTGAATCTTCGTTGTCCGgtacattccc ... gctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
EST: TGCGAACCCTTTGTGAATCTTCGTTGTCCG GGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCEST: gi|148956957|gb|EC902897.2|EC902897
genomic: TGCGAACCCTTTGTGAATCTTCGTTGTCCGgtacattccc ... gctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
EST: TGCGAACCCTTTGTGAATCTTCGTTGTCCG GGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCEST: gi|31358416|gb|CD442773.1|CD442773
genomic: TGCGAACCCTTTGTGAATCTTCGTTGTCCGgtacattccc ... gctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
EST: GCCGCTGCCGCTGCGAACCC-TTGTGAATCTTCGTTGTCCG GGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCEST: gi|76019791|gb|DT946961.1|DT946961
genomic: GCCGCTGCCGCTGCGAACCCTTTGTGAATCTTCGTTGTCCGgtacattccc ... gctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
EST: TGCGAACCCTTTGTGAATCTTCGTTGTCCG GGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCEST: gi|78109386|gb|DV527802.1|DV527802
genomic: TGCGAACCCTTTGTGAATCTTCGTTGTCCGgtacattccc ... gctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
EST: TGCGAACCCTTTGTGAATCTTCGTTGTCCG GGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCEST: gi|149089409|gb|EE178649.2|EE178649
genomic: TGCGAACCCTTTGTGAATCTTCGTTGTCCGgtacattccc ... gctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
EST: TGCGAACCCTTTGTGAATCTTCGTTGTCCG GGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCEST: gi|110201588|gb|EC883485.1|EC883485
genomic: TGCGAACCCTTTGTGAATCTTCGTTGTCCGgtacattccc ... gctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
EST: GCCGCCGCTGCCGCTGCCGCTGCGAACCCTTTGTGAATCTTCGTTGTCCG GGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
genomic: GCCGCCGCTGCCGCTGCCGCTGCGAACCCTTTGTGAATCTTCGTTGTCCGgtacattccc ... gctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgctcgtggggacgggtggtttcgtgtatagtttgagttgttaggcaccatgcaggcgtctttccgtcccgcgacgatcaggtctgtttgctgtcgcagGGCTGTGTGGGGCAGGCATGGCGCTCCGGAGGCTGCTGCAGGGGAGCGTCCTGCCGCGGATAATCGGCAGGGATTTGGCACCGGCCGTGGCGCCGTTTTC
- gctcgtg
- - - - - - - - - - - - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttt