1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttaaagcgctttaactcttgggagatttgcgaattgaatgaatgcaaatttgagagttcatgtggtttctgttgaatgtttcttgtccggaatgatccagGAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCAATCAGGGATAGCATAAGGGACACAGCTATTGGGAAAATAAGGAACACTG
species | Zea mays |
transcript | GRMZM2G120329_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAACCGGACCCAGAAGCTGGGCTCGCACATTAGTGCTACTCCCTTGGAG GAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCAEST: gi|149097280|gb|EE183103.2|EE183103
genomic: CTAACCGGACCCAGAAGCTGGCCTCGCACATTAGTGCTACTCCCTTGGAGgtattcaact ... aatgatccagGAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCA
EST: CTAACCGGACCCAGAAGCTGGCCTCGCACATTAGTGCTACTCCCTTGGAG GAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCAEST: gi|88757707|gb|DY541848.1|DY541848
genomic: CTAACCGGACCCAGAAGCTGGCCTCGCACATTAGTGCTACTCCCTTGGAGgtattcaact ... aatgatccagGAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCA
EST: CTAACCGGACCCAGAAGCTGGCCTCGCACATTAGTGCTACTTCCTTGGAG GAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCCEST: gi|14190976|gb|BG833206.1|BG833206
genomic: CTAACCGGACCCAGAAGCTGGCCTCGCACATTAGTGCTACTCCCTTGGAGgtattcaact ... aatgatccagGAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCA
EST: CTAACCGGACCCAGAAGCTGGCCTCTCACATTAGTGCTACTCCCTTGGAG GAGTGGGAAGGTAGGATGAACGTTGCGATGCCAAACTCCGCCACAACTGCAEST: gi|78115075|gb|DV533463.1|DV533463
genomic: CTAACCGGACCCAGAAGCTGGCCTCGCACATTAGTGCTACTCCCTTGGAGgtattcaact ... aatgatccagGAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCA
EST: CTAACCGGACCCAGAAGCTGGCCTCGCACATTAGTGCTACTCCCTTGGAG GAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCA
genomic: CTAACCGGACCCAGAAGCTGGCCTCGCACATTAGTGCTACTCCCTTGGAGgtattcaact ... aatgatccagGAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCA
aaatttgagagttcatgtggtttctgttgaatgtttcttgtccggaatgatccagGAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCAATCAGGGATAGCATAAGGGACACAGCTATTGGGAAAATAAGGAACACTG
aatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaagcgctttaactcttgggagatttgcgaattgaatgaatgcaaatttgagagttcatgtggtttctgttgaatgtttcttgtccggaatgatccagGAGTGGGAAGGTAGGATGAACGTTGCGATGTCAAATTCCGTCACAACTGCAATCAGGGATAGCATAAGGGACACAGCTATTGGGAAAATAAGGAACACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - -ttgaatg
- - - - - - - - - - - - - - - - - - - tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatg