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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatttactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtagGATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTGGTTGTGGTGTTGTCTGGTACCATTTTGTTGCATGTGACGAAGGATTATG

Basic information

species Zea mays
transcript GRMZM2G120175_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120175_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g43790.2 (Oryza sativa), 3'ss of exon 7
gtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatttactccctcatgcaccttttggaccctttcagatattttcatattgttgt-atttgtttcatatgcattcctcagctctagtatt-atttgacaaaaccgtaaactgatgccatgctgtttaaatgtttg-tgtagGATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTGGTTGTGGTGTTGTCTGGTACCATTTTGTTGCATGTGACGAAGGATTATG
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-------------------------------------------------------------------------------------------aaatcatactatcttcactaattttccatcaacttcgagatttaagggttgacattatgagctaacccaatt-tcccactctactctaataattggtgcagGATTGGTCTGGTCAAAGCCTTGGAAGCATTACTTCTGAAATCTGTGGTCTGATTGTTGTGTTGTCTGGTACCATTTTGTTACATGTGACGAAGGATTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234882|gb|DT642796.1|DT642796
EST:     ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAG                         GATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG
genomic: ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttg ... gtttgtgtagGATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG
EST: gi|101381796|gb|EB812955.1|EB812955
EST:     ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAG                         GATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG
genomic: ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttg ... gtttgtgtagGATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG
EST: gi|148934735|gb|EC878784.2|EC878784
EST:     ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAG                         GATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG
genomic: ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttg ... gtttgtgtagGATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG
EST: gi|211152612|gb|FL453073.1|FL453073
EST:     TGCCAGCGTCATAATGTTCAAG                         GATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG
genomic: TGCCAGCGTCATAATGTTCAAGgtaaattttg ... gtttgtgtagGATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG
EST: gi|166680559|gb|EG262871.1|EG262871
EST:     ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAG                         GATTGGTCTGGTCAAAG
genomic: ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttg ... gtttgtgtagGATTGGTCTGGTCAAAG
EST: gi|148943740|gb|EC888810.2|EC888810
EST:     ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAG                         GATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG
genomic: ATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttg ... gtttgtgtagGATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtagGATTGGTCTGGTCAAAGCCCTGGAAGCGTCATTTCTGAAATTTGTGGCTTGGTTGTGGTGTTGTCTGGTACCATTTTGTTGCATGTGACGAAGGATTATG
                      aactgat  putative branch site (score: 3)
                                      tttaaatgttt  TA-rich tract