Sequence
atgc intronic sequence ATGC exonic sequencegtacggcccttccgccccgtattcccaagccctagccagcacaccaagccgacgggttcgccctgctctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCGCGGGGTTCCAGTCCCGCGTCCAGCAGTGCGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119791_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 3'ss of exon 1
----gtacggcccttccgccccgtattcccaagccctagccagcacaccaagccgacgggttcgccctg-ctctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCGCGGGGTTCCAGTCCCGCGTCCAGCAGTGCGTG
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gtgagagcgctctcccgaaaacctagctttcgttccccttcgttgtgtgggattgatggggagggatggattctcttgcagGGCTGGCGAGTAGG---CTGGATCTGGACTCCGACGAGGTCCGCGCGCTCTCGGGCTTCCAGTCCCGCGTCCAGCAGTGCGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211445810|gb|FL398457.1|FL398457EST: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAG GGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcccaagccctagccagcacaccaagccgacgggttcgccctgctctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCGCGGGGTTCCAGTCCCGCGTCCAGCAGTGCGTG
ctctcac putative branch site (score: 3)
ttcgccctgctctc CT-rich tract