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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggcccttccgccccgtattcccaagccctagccagcacaccaagccgacgggttcgccctgctctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCGCGGGGTTCCAGTCCCGCGTCCAGCAGTGCGTG

Basic information

species Zea mays
transcript GRMZM2G119791_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119791_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 3'ss of exon 1
----gtacggcccttccgccccgtattcccaagccctagccagcacaccaagccgacgggttcgccctg-ctctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCGCGGGGTTCCAGTCCCGCGTCCAGCAGTGCGTG
    |  ||  |   |     | ||         ||    |             || |||   |    |  ||||  ||||||  | || | |||   |||||||||||| ||||||| || |||| |||| |||| |||||||||||||||||||||||||||
gtgagagcgctctcccgaaaacctagctttcgttccccttcgttgtgtgggattgatggggagggatggattctcttgcagGGCTGGCGAGTAGG---CTGGATCTGGACTCCGACGAGGTCCGCGCGCTCTCGGGCTTCCAGTCCCGCGTCCAGCAGTGCGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148936990|gb|EC881159.2|EC881159
EST:     CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAG                         GGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
EST: gi|78092057|gb|DV520431.1|DV520431
EST:     CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAG                         GGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
EST: gi|211356321|gb|FL081349.1|FL081349
EST:     CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAG                         GGGCGCCGGGTAGGMGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
EST: gi|149080539|gb|EE169577.2|EE169577
EST:     CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAG                         GGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
EST: gi|76288008|gb|DV027576.1|DV027576
EST:     CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAG                         GGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
EST: gi|211356320|gb|FL081348.1|FL081348
EST:     CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAG                         GGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
EST: gi|149082841|gb|EE172066.2|EE172066
EST:     CTTCTGCCTCGCCGTCCTCTCCATCCACTCCTCCTTCTTCGCCGCCCCAG                         GGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
EST: gi|78082688|gb|DV511091.1|DV511091
EST:     CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAG                         GGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccaagccctagccagcacaccaagccgacgggttcgccctgctctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCGCGGGGTTCCAGTCCCGCGTCCAGCAGTGCGTG
                                            ctctcac  putative branch site (score: 3)
                                   ttcgccctgctctc  CT-rich tract