1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtacgcccccctcacatcatcaacccaccatcctctggccgcttcatagaacacccctaggccttcgccatcccgtcggcgcgtcactgtgcgggtttgatatattttgagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGCTCAGGACGCAGGGGCTTATCGCTGGGCAGTGGGTGGACGCCTACGACG
species | Zea mays |
transcript | GRMZM2G119482_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|148933161|gb|EC876801.2|EC876801
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|211223364|gb|FL262903.1|FL262903
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|76289708|gb|DV029276.1|DV029276
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|149102730|gb|EE188270.2|EE188270
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|211223367|gb|FL262906.1|FL262906
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTKCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|211223366|gb|FL262905.1|FL262905
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|211225422|gb|FL262911.1|FL262911
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|76921995|gb|DV168797.1|DV168797
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|149000791|gb|EE038015.2|EE038015
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|78093012|gb|DV521386.1|DV521386
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: CCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|71330637|gb|DR802090.1|DR802090
genomic: CCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|211223365|gb|FL262904.1|FL262904
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGEST: gi|211223363|gb|FL262902.1|FL262902
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
EST: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCAC ATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
genomic: ACATCCCCGCCGCCGCAGCCTCTTCGTTCCGAGTCGTCTCCCTCCGCCACgtacgccccc ... gagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTG
ttcgccatcccgtcggcgcgtcactgtgcgggtttgatatattttgagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGCTCAGGACGCAGGGGCTTATCGCTGGGCAGTGGGTGGACGCCTACGACG
gtttgat putative branch site (score: 96)
tttgatatattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcccccctcacatcatcaacccaccatcctctggccgcttcatagaacacccctaggccttcgccatcccgtcggcgcgtcactgtgcgggtttgatatattttgagtgtgcagATGAGCGCGGACGCGGGCGCCGCGATGGAGAAGATCCGCGCCGCCGGGCTGCTCAGGACGCAGGGGCTTATCGCTGGGCAGTGGGTGGACGCCTACGACG
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