Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattccccgcatccccgatccggttgtatcttttcctgtgagaggtatctgatgctgttgcaatgcctgtgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATGTGGCGCGGGTGGAGAAGATGGAGGCCGACGGACGCGGCAGCGTGCGGGT

Basic information

species Zea mays
transcript GRMZM2G119357_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g32620.3 (Oryza sativa), 3'ss of exon 1
----------------------------------------------gtaattccccgcatccccgatccggttgtatcttttcctgtgagaggtatctgat--gctgttgcaatgcctgtgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATGTGGCGCGGGTGGAGAAGATGGAGGCCGACGGACGCGGCAGCGTGCGGGT
                                               | ||| ||| |   |  ||   |   | |       ||| | | || |    ||  |||||||    |   |    | | |||||| |||||||||||||||||| ||  |||||||||||| |||||||| ||||||||||||||||||||||||   ||||| ||||| |||||||||||
gtcgtacgaggtaacgtgcctccccgtcctctgatctcccgggttcttgatttccctcgggcgagaga-gaaagaaaaaaaatctgaggggggcaagcaatgtgctgttgtttggtgggattggagcagTGGGGGACTGCGTGCTGATGCGGCCGGTGGACTCGGACAACCAGCCGTACGTGGCGCGGGTGGAGAAGATGGAGCTGGACGGGCGCGGGAGCGTGCGGGT

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g32620.1 (Oryza sativa), 3'ss of exon 1
------------------------------------gtaattccccgcatccccgatccggttgtatcttttcctgtgagaggtatctgatg--ctgttgcaatgcctgtgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATGTGGCGCGGGTGGAGAAGATGGAGGCCGACGGACGCGGCAGCGTGCGGGT
                                     | ||| ||| |   |  ||   |   | |       ||| | | || |    |||  ||||||    |   |    | | |||||| |||||||||||||||||| ||  |||||||||||| |||||||| ||||||||||||||||||||||||   ||||| ||||| |||||||||||
gtaacgtgcctccccgtcctctgatctcccgggttcttgatttccctcgggcgagaga-gaaagaaaaaaaatctgaggggggcaagcaatgtgctgttgtttggtgggattggagcagTGGGGGACTGCGTGCTGATGCGGCCGGTGGACTCGGACAACCAGCCGTACGTGGCGCGGGTGGAGAAGATGGAGCTGGACGGGCGCGGGAGCGTGCGGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211421417|gb|FL412841.1|FL412841
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211136739|gb|FL400352.1|FL400352
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|20811207|gb|BQ295685.1|BQ295685
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211471157|gb|FL374859.1|FL374859
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTC
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTC
EST: gi|211466206|gb|FL385418.1|FL385418
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211212602|gb|FL411843.1|FL411843
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|29947220|gb|CB816542.1|CB816542
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|91878616|gb|EB408573.1|EB408573
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|26559400|gb|CA831635.1|CA831635
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|37423838|gb|CF649648.1|CF649648
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211008407|gb|FL384115.1|FL384115
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211119523|gb|FL427540.1|FL427540
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211104608|gb|FL378511.1|FL378511
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|87157797|gb|DY402586.1|DY402586
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211426762|gb|FL418447.1|FL418447
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211461041|gb|FL374799.1|FL374799
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCAC-AACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211476208|gb|FL374888.1|FL374888
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|87156816|gb|DY401605.1|DY401605
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|89762190|gb|DY689899.1|DY689899
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|89757789|gb|DY687239.1|DY687239
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|22819298|gb|BU499388.1|BU499388
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211461447|gb|FL402441.1|FL402441
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCNTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|22819350|gb|BU499440.1|BU499440
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211482256|gb|FL401501.1|FL401501
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211533537|gb|FL409966.1|FL409966
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211479854|gb|FL422855.1|FL422855
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211068884|gb|FL409568.1|FL409568
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211508683|gb|FL378809.1|FL378809
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211228035|gb|FL407510.1|FL407510
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211524193|gb|FL395759.1|FL395759
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211205005|gb|FL416126.1|FL416126
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211489994|gb|FL137477.1|FL137477
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCRTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211317910|gb|FL427640.1|FL427640
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211411404|gb|FL425499.1|FL425499
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211225827|gb|FL402235.1|FL402235
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211533016|gb|FL385906.1|FL385906
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211022155|gb|FL381485.1|FL381485
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211054890|gb|FL423028.1|FL423028
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|31406109|gb|CD484841.1|CD484841
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211439904|gb|FL424722.1|FL424722
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211539647|gb|FL412576.1|FL412576
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACCAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG
EST: gi|211301084|gb|FL395607.1|FL395607
EST:     GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATG                         TGGGCGACTGCGTGCTGATGCGGGCSTCGGACTCGGACAAGCAGCCGTATG
genomic: GAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 84

CCTCGCTCCACGGCCATGGTGAGGATGAAGCAGGTAAAGATCTCGGTAAAGAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATGTGGCGCGGGTGGAGAAGATGGAGGCCGACGGACGCGGCAGCGTGCGGGT


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 51

CCTCGCTCCACGGCCATGGTGAGGATGAAGCAGGTAAAGATCTCGGTAAAGAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATGTGGCGCGGGTGGAGAAGATGGAGGCCGACGGACGCGGCAGCGTGCGGGT


Block sizes: 43 (upstream exon), 43 (downstream exon)
Score: 40

CCTCGCTCCACGGCCATGGTGAGGATGAAGCAGGTAAAGATCTCGGTAAAGAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATGTGGCGCGGGTGGAGAAGATGGAGGCCGACGGACGCGGCAGCGTGCGGGT


Block sizes: 44 (upstream exon), 48 (downstream exon)
Score: 85

CCTCGCTCCACGGCCATGGTGAGGATGAAGCAGGTAAAGATCTCGGTAAAGAAGGACGTGGATTCGTACACAATCCGCGGCACTAACAAGGTCGTCCATGgtaattcccc ... tgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATGTGGCGCGGGTGGAGAAGATGGAGGCCGACGGACGCGGCAGCGTGCGGGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatcttttcctgtgagaggtatctgatgctgttgcaatgcctgtgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATGTGGCGCGGGTGGAGAAGATGGAGGCCGACGGACGCGGCAGCGTGCGGGT
                      atctgat  putative branch site (score: 85)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattccccgcatccccgatccggttgtatcttttcctgtgagaggtatctgatgctgttgcaatgcctgtgctgggaagTGGGCGACTGCGTGCTGATGCGGGCGTCGGACTCGGACAAGCAGCCGTATGTGGCGCGGGTGGAGAAGATGGAGGCCGACGGACGCGGCAGCGTGCGGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
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