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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatctccctcccccttactctctcgcctgttgcatcttcgctgccctgcagccatggatttggcgtcgcccttgcgaactcctgacgtgcaacgggccttgtttctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT

Basic information

species Zea mays
transcript GRMZM2G119169_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396530|gb|DN229399.1|DN229399
EST:     GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG                         GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
EST: gi|33095182|gb|CF055176.1|CF055176
EST:     GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG                         GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
EST: gi|211383659|gb|FL000696.1|FL000696
EST:     GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG                         GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
EST: gi|211383667|gb|FL000704.1|FL000704
EST:     GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG                         GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
EST: gi|32944401|gb|CF049220.1|CF049220
EST:     GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG                         GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcgtcgcccttgcgaactcctgacgtgcaacgggccttgtttctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
                    tcctgac  putative branch site (score: 2)
                                     ccttgtttct  putative PPT