Sequence
atgc intronic sequence ATGC exonic sequence...gttcttgaatccatacactgtcccaaaaaattgtcactgaaatataagaccacatcttgcatgtaatattcatgtgtaaactattttcttttcttttcagCTTTGACCGTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACCGTCATCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G118693_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g45670.1 (Oryza sativa), 3'ss of exon 1
-gttcttgaatccataca-ctgtcccaaaaaattgtcactgaaatataagacca-catcttgcatgtaatattcatgtgtaaactattttcttttcttttcagCTTTGACCGTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACCGTCATCCAG
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tgctgttgaattcaagtatctgtacaaaaggtttgatattcaattgtaggactgtccttttacatctgatattcatgtgtaa--taccttgctt-cttttcagCTTTGATCGTGATTGGAAAAAGATAGAAGCTTTTGTTGGATCGAAGACTGTTATTCAG
upper sequence: GRMZM2G118693_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G30250.1 (Glycine max), 3'ss of exon 1
gttcttga-atccatacactgtcccaaaaaattgtcactgaaatataagaccacatcttgcatgtaatattcatgtgtaaactattttcttttcttttcagCTTTGACCGTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACCGTCATCCAG
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atttaagctatttgtttgtttttcccttttatggccttggtgccatccttttgcattat-ctcatattgttttttttttttgttccttcattctgtatcagATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTCATCCAG
upper sequence: GRMZM2G118693_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G24400.1 (Glycine max), 3'ss of exon 1
gttcttgaatccatac-actgtcccaaaaaattgtcactgaaatataagaccacatcttgcatgtaatattca---tgtgtaaactattttcttttcttttcagCTTTGACCGTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACCGTCATCCAG
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---ttcaaattaaagctagtgtttgtttctcccctttcttgaccttggggtctctatttgc-cactatcctcacattgttttgttccttcatttcttttttcagGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGAGTGTTATACAG
upper sequence: GRMZM2G118693_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G37520.1 (Glycine max), 3'ss of exon 1
---gttcttgaatccatacactgtcccaaaaaattgtcactgaaatataagaccacatcttgcatgtaatattcatgtgtaaactattttcttttctt-ttcagCTTTGACCGTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACCGTCATCCAG
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tacagtgtcaaattaagataatcgtttgttttcccttttctggcct-tagtatcatccttt---tgcattatctcattgttttgtattttcattctttatccagATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTTATCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagaccacatcttgcatgtaatattcatgtgtaaactattttcttttcttttcagCTTTGACCGTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACCGTCATCCAG
ctattttcttttcttt CT-rich tract
taaactattttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcttgaatccatacactgtcccaaaaaattgtcactgaaatataagaccacatcttgcatgtaatattcatgtgtaaactattttcttttcttttcagCTTTGACCGTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACCGTCATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG