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...ttattatgtatatttggataaaaggggggcattttaaagtttttttttgtatgtctagttgtggttatgttcattatttcatttggtttctttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATGGAACAAGCAACTATTCAGTGCCTCGGTTGTCTCAAGTCAAAAATACCT
species | Zea mays |
transcript | GRMZM2G118467_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|71763927|gb|DR961864.1|DR961864
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGAACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGEST: gi|148983394|gb|EE029390.2|EE029390
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTG
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|71763924|gb|DR961861.1|DR961861
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|31354963|gb|CD439320.1|CD439320
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|31355095|gb|CD439452.1|CD439452
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|31353161|gb|CD437518.1|CD437518
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|149111287|gb|EE294785.2|EE294785
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|148934306|gb|EC878332.2|EC878332
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|5268397|gb|AI770361.1|AI770361
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GCGG-ACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATEST: gi|149111055|gb|EE294552.2|EE294552
genomic: GCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
EST: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATG GTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
genomic: GATGTCCCCGAAACCGCGCCCGCTGATGGCCAGTTCATGCGGTACAGATGgtaagtagct ... tttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAAT
tttgtatgtctagttgtggttatgttcattatttcatttggtttctttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATGGAACAAGCAACTATTCAGTGCCTCGGTTGTCTCAAGTCAAAAATACCT
tttggtttctttctt CT-rich tract
ttatgttcattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattatgtatatttggataaaaggggggcattttaaagtttttttttgtatgtctagttgtggttatgttcattatttcatttggtttctttcttgaagGTATCGCATACAGAGCGACCGGAAAGTCCCTATCTGCAGTGTGCATCCAATGGAACAAGCAACTATTCAGTGCCTCGGTTGTCTCAAGTCAAAAATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - tatgtat
- - - - - - - - gataaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatt