Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgagatctagcgccttgattatccttaactggtcaactagtattcagcttcaactgcattcattaatatctcttttttttgttttgttgcaacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG

Basic information

species Zea mays
transcript GRMZM2G118003_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211195344|gb|FK979452.1|FK979452
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32848755|gb|CD988436.1|CD988436
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211322178|gb|FK979475.1|FK979475
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32928641|gb|CF033453.1|CF033453
EST:     ACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCAT
genomic: ACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGT-CCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCAT
EST: gi|6826935|gb|AW330578.1|AW330578
EST:     ACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: ACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211197751|gb|FK979466.1|FK979466
EST:     CACCAACGGCCGGGGCCC-TCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCNAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211195347|gb|FK979455.1|FK979455
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|109179241|gb|EC379886.1|EC379886
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211192948|gb|FK979444.1|FK979444
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211192942|gb|FK979438.1|FK979438
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAATGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211190542|gb|FK979428.1|FK979428
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|60397967|gb|DN230783.1|DN230783
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211195341|gb|FK979449.1|FK979449
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211192947|gb|FK979443.1|FK979443
EST:     GGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: GGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211190538|gb|FK979424.1|FK979424
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|148934074|gb|EC878088.2|EC878088
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|149096066|gb|EE181748.2|EE181748
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211192949|gb|FK979445.1|FK979445
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAAT
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAAT
EST: gi|67024539|gb|CO453288.1|CO453288
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211197749|gb|FK979464.1|FK979464
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211190541|gb|FK979427.1|FK979427
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGNGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|31910377|gb|CD651393.1|CD651393
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|71331060|gb|DR802360.1|DR802360
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211190545|gb|FK979431.1|FK979431
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211322189|gb|FK979486.1|FK979486
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|148969028|gb|EE019736.2|EE019736
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32929351|gb|CF034163.1|CF034163
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211195351|gb|FK979459.1|FK979459
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|149076619|gb|EE165258.2|EE165258
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GATATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211322184|gb|FK979481.1|FK979481
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211322188|gb|FK979485.1|FK979485
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211322181|gb|FK979478.1|FK979478
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211195352|gb|FK979460.1|FK979460
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|13237071|gb|BG355085.1|BG355085
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAC                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211195340|gb|FK979448.1|FK979448
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211192936|gb|FK979432.1|FK979432
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32929206|gb|CF034018.1|CF034018
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211192938|gb|FK979434.1|FK979434
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211197754|gb|FK979469.1|FK979469
EST:     ACCAACGGCCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: ACCAACGGCC-GGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|148931885|gb|EC877350.2|EC877350
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|148931067|gb|EC873678.2|EC873678
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32928537|gb|CF033349.1|CF033349
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211190539|gb|FK979425.1|FK979425
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|6564100|gb|AW231722.1|AW231722
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211192950|gb|FK979446.1|FK979446
EST:     GGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: GGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211195346|gb|FK979454.1|FK979454
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|211192937|gb|FK979433.1|FK979433
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|28909524|gb|CB330973.1|CB330973
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32929111|gb|CF033923.1|CF033923
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGCCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32848750|gb|CD988431.1|CD988431
EST:     TTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: TTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32837200|gb|CD976878.1|CD976878
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|148996928|gb|EE035737.2|EE035737
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|67018030|gb|CO446779.1|CO446779
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32929433|gb|CF034245.1|CF034245
EST:     GGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: GGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32929642|gb|CF034454.1|CF034454
EST:     ATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: ATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32928848|gb|CF033660.1|CF033660
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATA-TGNCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCAT
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTG-CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCAT
EST: gi|32847307|gb|CD986988.1|CD986988
EST:     GGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: GGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32837471|gb|CD977149.1|CD977149
EST:     CACCAACGACCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         CAAATATTGCAGGGAATCAAAATGCAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32929091|gb|CF033903.1|CF033903
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32849499|gb|CD989180.1|CD989180
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
EST: gi|32928412|gb|CF033224.1|CF033224
EST:     ACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCNCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCAT
genomic: ACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTC-CCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCAT
EST: gi|101393334|gb|EB818598.1|EB818598
EST:     CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG                         GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC
genomic: CACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAGgtactgcttc ... caacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcttcaactgcattcattaatatctcttttttttgttttgttgcaacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG
                cattaat  putative branch site (score: 3)
                        tctcttttttttgttt  CT-rich tract
             attcattaatatctct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgagatctagcgccttgattatccttaactggtcaactagtattcagcttcaactgcattcattaatatctcttttttttgttttgttgcaacgagcagGAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA