Sequence
atgc intronic sequence ATGC exonic sequencegtcagtcccagttcgccccctcggggttccgaagcatgcagggtcgaattgcgggacttagtatttgtttccattattaatccggctgtagaattttgcaattcagacattcctttcgttcgttgaactactgctgcttgcttgtgatcacgccatgtttctgttgcactgcagGAGGAAGAAGCTTACACCTGGGAGCTTAATGAAGGGCATTATACGGTCTGGGAGCGGTGATGCCACCCCTGCAGAGGGCGATCAGGTTGAAAGGACTGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G117746_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g25140.1 (Oryza sativa), 3'ss of exon 1
------------------gtcagtcccagttcgccccctcggggttccgaagcatgcagggtcgaattgcgggacttagta-tttgtttccattatt-aatccggctgtagaattttgcaattcagacattcctttcgttcgttgaactactgctgcttgcttgtgatcacgccatgtttctgttgcactgcagGAGGAAGAAGCTTACACCTGGGAGCTTAATGAAGGGCATTATACGGTCTGGGAGCGGTGATGCCACCCCTGCAGAGGGCGATCAGGTTGAAAGGACTGCC
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gtaggtctcggagggggggaatttttttttttatctccgctttcgctcgtcgcgggggtagtagggcggtagagctctgtggtctgttgatcttagcgaagacgggagcgggagca-gcaga--aaatgtggcgggggaagcttgggcgatcgctgcattcacgct-ttgtctggtctgtcgtttgtgccgcagGAGGAAGAAGCTTACTCCGGGGAGCTTGATGAAGGGGCTTATTCGGTCTGGTGGGGGTGACGCGACCCCTGCGGAGGGAGATCAG---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211501817|gb|FL043374.1|FL043374EST: CCGCCGCCCGTAAAGAAGAAGTCACCGGCGGAGGAGGAGGCCGAGAAGAG GAGGAAGAAGCTTACACCTGGGAGCTTAATGAAGGGCATTATACGGTCTGG
genomic: CCGCCGCCCGTAAAGAAGAAGTCACCGGCGGAGGAGGAGGCCGAGAAGAGgtcagtccca ... tgcactgcagGAGGAAGAAGCTTACACCTGGGAGCTTAATGAAGGGCATTATACGGTCTGG
EST:
gi|211501818|gb|FL043375.1|FL043375EST: CCGCCGCCCGTAAAGAAGAAGTCACCGGCGGAGGAGGAGGCCGAGAAGAG GAGGAAGAAGCTTACACCTGGGAGCTTAATGAAGGGCATTATACGGTCTGG
genomic: CCGCCGCCCGTAAAGAAGAAGTCACCGGCGGAGGAGGAGGCCGAGAAGAGgtcagtccca ... tgcactgcagGAGGAAGAAGCTTACACCTGGGAGCTTAATGAAGGGCATTATACGGTCTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcgttgaactactgctgcttgcttgtgatcacgccatgtttctgttgcactgcagGAGGAAGAAGCTTACACCTGGGAGCTTAATGAAGGGCATTATACGGTCTGGGAGCGGTGATGCCACCCCTGCAGAGGGCGATCAGGTTGAAAGGACTGCC
tttctgtt CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtcccagttcgccccctcggggttccgaagcatgcagggtcgaattgcgggacttagtatttgtttccattattaatccggctgtagaattttgcaattcagacattcctttcgttcgttgaactactgctgcttgcttgtgatcacgccatgtttctgttgcactgcagGAGGAAGAAGCTTACACCTGGGAGCTTAATGAAGGGCATTATACGGTCTGGGAGCGGTGATGCCACCCCTGCAGAGGGCGATCAGGTTGAAAGGACTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG