Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttgtacatcacttgtaaatcatcattagtttatggagaactgagtcctttaggtttgaagctgtttagaatgtatgctcatttagttggctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTT

Basic information

species Zea mays
transcript GRMZM2G117388_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117388_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g09550.2 (Oryza sativa), 3'ss of exon 1
-gcttgtacatcacttgtaaatc-atcattagtttatggagaactgagtcctttaggtttgaagctgttta-gaatgtatgctcatttagttggctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTT
   ||   |     ||  |  |  | ||| |    ||  |   |  |   ||||     |  ||||| ||  | ||    | | | ||| ||  | |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||| || ||    |||||||||||  || | |||   ||||||
tagttaatcgaggtttacagctagaacatgaacacatcaaagtcataactctttg---ctacagctgcttctggatactcgattacttactttcccttttcagGTACTACAACTCACTTCCACCAATAAGCAAGGCATATGGAACATTGTGTTTCTTTGCCACTGTACTGTGCCAGCTCCAGATACTGAATCCACCTTTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211267826|gb|FL116414.1|FL116414
EST:     ACTAACCGACCTCGGATCCATCGAMGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211262952|gb|FL116383.1|FL116383
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|60672357|gb|DN475118.1|DN475118
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATTTGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211262954|gb|FL116385.1|FL116385
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265392|gb|FL116398.1|FL116398
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211028976|gb|FL127255.1|FL127255
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACCATTGTGTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGA-CATTGTGTT
EST: gi|211028975|gb|FL127254.1|FL127254
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211028980|gb|FL127259.1|FL127259
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211262957|gb|FL116388.1|FL116388
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267823|gb|FL116411.1|FL116411
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|67040755|gb|CO467010.1|CO467010
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211262949|gb|FL116380.1|FL116380
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTMCTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211262955|gb|FL116386.1|FL116386
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|71435983|gb|DR817033.1|DR817033
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCGTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265395|gb|FL116401.1|FL116401
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267821|gb|FL116409.1|FL116409
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265387|gb|FL116393.1|FL116393
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267816|gb|FL116404.1|FL116404
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACTTATTAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267827|gb|FL116415.1|FL116415
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211028978|gb|FL127257.1|FL127257
EST:     AACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: AACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267822|gb|FL116410.1|FL116410
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265385|gb|FL116391.1|FL116391
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211262956|gb|FL116387.1|FL116387
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTAGTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACANTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|71767312|gb|DR965249.1|DR965249
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211411636|gb|FL206599.1|FL206599
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267820|gb|FL116408.1|FL116408
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267828|gb|FL116416.1|FL116416
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211028983|gb|FL127262.1|FL127262
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211028979|gb|FL127258.1|FL127258
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|93012514|gb|EB638034.1|EB638034
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|67029845|gb|CO458594.1|CO458594
EST:     AC-AACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTATAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265390|gb|FL116396.1|FL116396
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267824|gb|FL116412.1|FL116412
EST:     ACTAACCGACCTCGGATCCATCGACGCGTRAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211028981|gb|FL127260.1|FL127260
EST:     AACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: AACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|67018558|gb|CO447307.1|CO447307
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|71438420|gb|DR819470.1|DR819470
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265388|gb|FL116394.1|FL116394
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267829|gb|FL116417.1|FL116417
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265396|gb|FL116402.1|FL116402
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211028977|gb|FL127256.1|FL127256
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265394|gb|FL116400.1|FL116400
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|93015533|gb|EB641053.1|EB641053
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265384|gb|FL116390.1|FL116390
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267819|gb|FL116407.1|FL116407
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211262950|gb|FL116381.1|FL116381
EST:     ACTAACCGACCT-GGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|71438460|gb|DR819510.1|DR819510
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265391|gb|FL116397.1|FL116397
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCATTTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265393|gb|FL116399.1|FL116399
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265386|gb|FL116392.1|FL116392
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211267825|gb|FL116413.1|FL116413
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|32788829|gb|CD941065.1|CD941065
EST:     GATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: GATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|211265383|gb|FL116389.1|FL116389
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: gi|111145818|gb|EE257958.1|EE257958
EST:     ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA                         GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcctttaggtttgaagctgtttagaatgtatgctcatttagttggctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTT
                                              ctttttc  CT-rich tract
                    tttagaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcttgtacatcacttgtaaatcatcattagtttatggagaactgagtcctttaggtttgaagctgtttagaatgtatgctcatttagttggctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC