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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatatcttcagtccccattttgataaaaattttcaattgatttttagtgtgcatcgggttttagtgccttcccttatgttgttttatttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG

Basic information

species Zea mays
transcript GRMZM2G116840_T06
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116840_T06 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 3
-----------gtcaatatcttcagtccccattttgataaaaattttcaattga-tttttagtgtgcatcgggttttagtgccttcccttatgttgttttattttttt-cagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG
             |  | |||| |  |    | || |||     |||   |||  | |   |  ||||  ||  |  |  || ||   ||   | |  || ||||| |  |||| |||||||| |||||||| || |||||||| ||||||||||||||||| || ||||||||||
gtgggatttcttgccttctctttatactatttatttatactgtgtttagtttgggtatactgcatgcactggaatccaacgctttgggtttgatcgacttgtttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG

upper sequence: GRMZM2G116840_T06 (Zea mays), 3'ss of exon 1
lower sequence: AT5G42990.1 (Arabidopsis thaliana), 3'ss of exon 3
gtcaatatcttcagtccccattttgataaaaattttcaattgatttttagtgtgcatcgggttttagtgccttcc----cttatgttgttttatttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG
 |  || | ||  |||      ||  |   |  | |  | |||  |||  | | | | |  || |  ||  |||      | ||||  ||   ||||  |||||| || ||| | |  ||||||||| | ||||| || ||||||||||||||||| || |||||||
-tgcatgttttaggtcagagaattagtttgagatat--agtgacattttctctacttggttttgtgctgtgttctgattttcatgtgtttggtttttgatcagGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGCAATGGACATATTTGTTTAG

upper sequence: GRMZM2G116840_T06 (Zea mays), 3'ss of exon 1
lower sequence: AT1G75440.1 (Arabidopsis thaliana), 3'ss of exon 3
gtca----atatcttcagtc--cccattttgataaaaattttcaattgatttttagtgtgcatcgggttttagtgccttcccttatgttgttttatttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG
||||    || | || |     | |   ||||    | || ||  ||  ||  |  | ||  |  | || || ||  ||   |    || ||  || || | ||||| || ||||| |||||||| ||  ||||||| ||||||||||||||||| || || ||| |||
gtcatggaatgttttgatctgtctcgagttgacttgagttctctgttctttacttct-tgtttgcgtttgtaatgtttttttt----tttttaaatattgtacagGTGATTTTTCTTCATCCAGCTCCTCTGCATCCTCACATTTACAGCAATGGGCATATTTGTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagtgtgcatcgggttttagtgccttcccttatgttgttttatttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG
                         ccttcccttatgttgt  CT-rich tract
                                ttatgttgttttattt  TA-rich tract