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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcactcgctatactccatgcgccggcagtgtggctgattttcctgtgtgctcatatgtctgactgattttgttgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTGATTGGCGGCGGCGGGAGCGGGAGCGGAGGCGACGGGGACTCGCTGGGCC

Basic information

species Zea mays
transcript GRMZM2G116658_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116658_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g35760.2 (Oryza sativa), 3'ss of exon 1
gtacgcactcgctatactccatgcgccggcagtgtggctgattttcctgtgtgctcatatgtc---tgact-------gattttg---ttgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATG---GGCCTGATTGGCGGCGGCGGGAGCGGGAGCGGAGGCGACGGGGACTCGCTGGGCC
|||    ||| | |   |     |  |    || ||  ||||| |     ||||| | || |    | |||        |||||    ||||||||    |    |  ||||| ||    ||||| |||||| ||   ||   |   | | |||| |||  |||||||||||| ||||| |||||||| ||||||||||| |
gtagattctcacgagcttttccacttcttttgtttg--tgattctttgccgtgcttagatattgatttacttttttaaaattttaatcttgtgttggtttagCAAACTATGGACGGTAGCCAGCTCGGCGACGTGAACCGGTCGCTTGCCATGATGGGCAACGGCGGGAGCGGCAGCGGCGGCGACGGCGACTCGCTGGGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148950104|gb|EC895640.2|EC895640
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|78086119|gb|DV514512.1|DV514512
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|74239640|gb|DT647554.1|DT647554
EST:     CCTGCCGAAACCTGGCGGATTCAGCG-CACGGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCNTG
genomic: CCTGCCGAAACCTGGCGGATTCGGCGCCAC-GGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|149095884|gb|EE181544.2|EE181544
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGC
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGC
EST: gi|149108009|gb|EE292364.2|EE292364
EST:     CCTG-CGAAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCTGCCG-AAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|78081945|gb|DV510357.1|DV510357
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|78115151|gb|DV533539.1|DV533539
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71422374|gb|DR805708.1|DR805708
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|76284891|gb|DV024459.1|DV024459
EST:     CC-TGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGA
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGA
EST: gi|71774500|gb|DR972378.1|DR972378
EST:     ACCTGACGGATTCGGCGACACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: ACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71761496|gb|DR959433.1|DR959433
EST:     CCCTGCCGAAACCTGGCAGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|93281130|gb|EB673394.1|EB673394
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|74244109|gb|DT652023.1|DT652023
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|148962578|gb|EE013456.2|EE013456
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|149007375|gb|EE040228.2|EE040228
EST:     CCCTGCCGAAACCTGGCGGAATCGGCGCCCCGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCACCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71769292|gb|DR967229.1|DR967229
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGGCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|93281129|gb|EB673393.1|EB673393
EST:     TCCCTCGGGCTG                         CAAACGAACATGGAAAGGGGCTCAGCTGGGCGACTTGGGTGGTATGGGCCT
genomic: TCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGG-AAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCT
EST: gi|71319102|gb|DR796313.1|DR796313
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|76913688|gb|DV165224.1|DV165224
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71774501|gb|DR972379.1|DR972379
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCC
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCC
EST: gi|149072236|gb|EE160486.2|EE160486
EST:     GGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTGGGGTCGTATGGGCCTG
genomic: GGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71422955|gb|DR805903.1|DR805903
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71450349|gb|DR831399.1|DR831399
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71771319|gb|DR969256.1|DR969256
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|78086118|gb|DV514511.1|DV514511
EST:     GCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACAT-GAAGGGGCTCAGCTGGGCGACTGGGGTCGTATGGGCCTG
genomic: GCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|148950108|gb|EC895644.2|EC895644
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71446807|gb|DR827857.1|DR827857
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71440277|gb|DR821327.1|DR821327
EST:     GCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: GCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|93015239|gb|EB640759.1|EB640759
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71432527|gb|DR813577.1|DR813577
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|149099742|gb|EE185795.2|EE185795
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|78106732|gb|DV525150.1|DV525150
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71298909|gb|DR785449.1|DR785449
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|149016056|gb|EE045561.2|EE045561
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|149108010|gb|EE292365.2|EE292365
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71319101|gb|DR796312.1|DR796312
EST:     CCTGCCGAAA-CTGGCCGGAATCGGCGCCACGGGGCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCTGCCGAAACCTGG-CGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|149099741|gb|EE185794.2|EE185794
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCNTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71767035|gb|DR964972.1|DR964972
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTAT
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTAT
EST: gi|148941558|gb|EC886494.2|EC886494
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71306809|gb|DR789560.1|DR789560
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|74245985|gb|DT653899.1|DT653899
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|74236621|gb|DT644535.1|DT644535
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|149075615|gb|EE164153.2|EE164153
EST:     TGCCGAAACCTGGGCGGATTCGGCGCCCACGGGTCTCTCCCCTCGGGCTG                         CAAACGAACATGGAAGGGG
genomic: TGCCGAAACCTGG-CGGATTCGGCGCC-ACGGGTCTCTCCC-TCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGG
EST: gi|74239641|gb|DT647555.1|DT647555
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|50325583|gb|CO520709.1|CO520709
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71310437|gb|DR791524.1|DR791524
EST:     GCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACG-ACATGGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCT
genomic: GCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACAT-GGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCT
EST: gi|76289818|gb|DV029386.1|DV029386
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|74232261|gb|DT640175.1|DT640175
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|94472272|gb|EB701230.1|EB701230
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|76925139|gb|DV170299.1|DV170299
EST:     CGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGAAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|50324568|gb|CO519694.1|CO519694
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|91052678|gb|EB163096.1|EB163096
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTC
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTC
EST: gi|71765334|gb|DR963271.1|DR963271
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCCT
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCC-T
EST: gi|71440278|gb|DR821328.1|DR821328
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|74240988|gb|DT648902.1|DT648902
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|78110555|gb|DV528965.1|DV528965
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|71767646|gb|DR965583.1|DR965583
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
EST: gi|76932853|gb|DV173204.1|DV173204
EST:     CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTG                         CAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG
genomic: CCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 113

CGGCGGCGGCACGGGCATGCACAACCCCGGCCGCCTCGTCCCGGCCCCGCCCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTGATTGGCGGCGGCGGGAGCGGGAGCGGAGGCGACGGGGACTCGCTGGGCC


Block sizes: 47 (upstream exon), 47 (downstream exon)
Score: 36

CGGCGGCGGCACGGGCATGCACAACCCCGGCCGCCTCGTCCCGGCCCCGCCCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTGATTGGCGGCGGCGGGAGCGGGAGCGGAGGCGACGGGGACTCGCTGGGCC


Block sizes: 34 (upstream exon), 16 (downstream exon)
Score: 1

CGGCGGCGGCACGGGCATGCACAACCCCGGCCGCCTCGTCCCGGCCCCGCCCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTGATTGGCGGCGGCGGGAGCGGGAGCGGAGGCGACGGGGACTCGCTGGGCC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 100

CGGCGGCGGCACGGGCATGCACAACCCCGGCCGCCTCGTCCCGGCCCCGCCCCTGCCGAAACCTGGCGGATTCGGCGCCACGGGTCTCTCCCTCGGGCTGgtacgcactc ... tgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTGATTGGCGGCGGCGGGAGCGGGAGCGGAGGCGACGGGGACTCGCTGGGCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtggctgattttcctgtgtgctcatatgtctgactgattttgttgtgttgtagCAAACGAACATGGAAGGGGCTCAGCTGGGCGACTTGGGTCGTATGGGCCTGATTGGCGGCGGCGGGAGCGGGAGCGGAGGCGACGGGGACTCGCTGGGCC
                                 gactgat  putative branch site (score: 100)
                                       ttttgtt  CT-rich tract
                                      attttgtt  TA-rich tract