1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtcaagcctccggggtctctccttaccgtactctcgctcagtttcggcttccgcccgagaggtgttcggcggaatgctccggcgagctgctgacgcgggccgggatggtcgtgtcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATCACCTCCGCCATCACGGAGGTCCTCAACGACAGCCTCGAGAGCATCTCCG
species | Zea mays |
transcript | GRMZM2G116427_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTG GTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATCEST: gi|21330705|gb|BQ486086.1|BQ486086
genomic: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTGgtaagtcaag ... tcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATC
EST: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTG GTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATCEST: gi|21390595|gb|BQ528644.1|BQ528644
genomic: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTGgtaagtcaag ... tcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATC
EST: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTG GTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATCEST: gi|21480787|gb|BQ577470.1|BQ577470
genomic: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTGgtaagtcaag ... tcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATC
EST: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTG GTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATCEST: gi|26455505|gb|CA827088.1|CA827088
genomic: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTGgtaagtcaag ... tcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATC
EST: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTG GTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATCEST: gi|87154287|gb|DY399076.1|DY399076
genomic: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTGgtaagtcaag ... tcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATC
EST: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTG GTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATCEST: gi|21481481|gb|BQ578164.1|BQ578164
genomic: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTGgtaagtcaag ... tcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATC
EST: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTG GTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATC
genomic: TCGTCAAGACCAACGGCCGCCGCGCCTTCCTCGTAGACACCCTCGCCCTGgtaagtcaag ... tcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATC
gcggaatgctccggcgagctgctgacgcgggccgggatggtcgtgtcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATCACCTCCGCCATCACGGAGGTCCTCAACGACAGCCTCGAGAGCATCTCCG
tgctgac putative branch site (score: 44)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcaagcctccggggtctctccttaccgtactctcgctcagtttcggcttccgcccgagaggtgttcggcggaatgctccggcgagctgctgacgcgggccgggatggtcgtgtcgctcgcagGTCAGGAAGCTGGAGTCGCAGGGCGTGCCCACCAAGCAGGCGGAGGCGATCACCTCCGCCATCACGGAGGTCCTCAACGACAGCCTCGAGAGCATCTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA