Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttgatttttttcttttgaataaacccacttttagttatattgattgattgaagggacacttatcattctttactttaatggtgcactacttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGACTTTTGGAGAGA

Basic information

species Zea mays
transcript GRMZM2G116087_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211279049|gb|FK954634.1|FK954634
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280854|gb|FK954652.1|FK954652
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211029807|gb|FL058985.1|FL058985
EST:     AKGAACAAGGGGCTCCGCACGGCRAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211282657|gb|FK954658.1|FK954658
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277240|gb|FK954615.1|FK954615
EST:     GTGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: G-GAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211282662|gb|FK954663.1|FK954663
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211282671|gb|FK954672.1|FK954672
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211282668|gb|FK954669.1|FK954669
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACTCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280849|gb|FK954647.1|FK954647
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACAT
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACAT
EST: gi|211282667|gb|FK954668.1|FK954668
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGAATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211282658|gb|FK954659.1|FK954659
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277248|gb|FK954623.1|FK954623
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211275430|gb|FK954603.1|FK954603
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279047|gb|FK954632.1|FK954632
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279053|gb|FK954638.1|FK954638
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284479|gb|FK954684.1|FK954684
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACTCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280852|gb|FK954650.1|FK954650
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|148961522|gb|EE012274.2|EE012274
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279048|gb|FK954633.1|FK954633
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279056|gb|FK954641.1|FK954641
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284471|gb|FK954676.1|FK954676
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277244|gb|FK954619.1|FK954619
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280853|gb|FK954651.1|FK954651
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACTCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280845|gb|FK954643.1|FK954643
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277252|gb|FK954627.1|FK954627
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAAACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284472|gb|FK954677.1|FK954677
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279046|gb|FK954631.1|FK954631
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|149086680|gb|EE176220.2|EE176220
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284470|gb|FK954675.1|FK954675
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280850|gb|FK954648.1|FK954648
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGAATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277250|gb|FK954625.1|FK954625
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277238|gb|FK954613.1|FK954613
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284469|gb|FK954674.1|FK954674
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280851|gb|FK954649.1|FK954649
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277251|gb|FK954626.1|FK954626
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284477|gb|FK954682.1|FK954682
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284478|gb|FK954683.1|FK954683
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280848|gb|FK954646.1|FK954646
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|148938252|gb|EC882544.2|EC882544
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|78111571|gb|DV529968.1|DV529968
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277246|gb|FK954621.1|FK954621
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGAC
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCT-AAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGAC
EST: gi|211277243|gb|FK954618.1|FK954618
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGATAKGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280846|gb|FK954644.1|FK954644
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211275438|gb|FK954611.1|FK954611
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211275433|gb|FK954606.1|FK954606
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211275432|gb|FK954605.1|FK954605
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279050|gb|FK954635.1|FK954635
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211275439|gb|FK954612.1|FK954612
EST:     AGGAACAAKGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284473|gb|FK954678.1|FK954678
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211282663|gb|FK954664.1|FK954664
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211275437|gb|FK954610.1|FK954610
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGAATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|149029771|gb|EE286265.2|EE286265
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|28873742|gb|CB329688.1|CB329688
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211275436|gb|FK954609.1|FK954609
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284475|gb|FK954680.1|FK954680
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|148952137|gb|EC897931.2|EC897931
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277245|gb|FK954620.1|FK954620
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|148973538|gb|EE024639.2|EE024639
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277247|gb|FK954622.1|FK954622
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279057|gb|FK954642.1|FK954642
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277242|gb|FK954617.1|FK954617
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280847|gb|FK954645.1|FK954645
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279051|gb|FK954636.1|FK954636
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284468|gb|FK954673.1|FK954673
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GTAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279044|gb|FK954629.1|FK954629
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211466167|gb|FL380586.1|FL380586
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|71448582|gb|DR829632.1|DR829632
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279043|gb|FK954628.1|FK954628
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280855|gb|FK954653.1|FK954653
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279052|gb|FK954637.1|FK954637
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|78115655|gb|DV534043.1|DV534043
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATACCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|78089260|gb|DV517634.1|DV517634
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284476|gb|FK954681.1|FK954681
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211277239|gb|FK954614.1|FK954614
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211284474|gb|FK954679.1|FK954679
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTNACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211275434|gb|FK954607.1|FK954607
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211282665|gb|FK954666.1|FK954666
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|149088482|gb|EE177591.2|EE177591
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279045|gb|FK954630.1|FK954630
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280859|gb|FK954657.1|FK954657
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211282660|gb|FK954661.1|FK954661
EST:     GGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTTAA                         GGAAGAGAGGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGA
genomic: GGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGC-TAAgtacgaacgc ... cttttattagGGAAGAGA-GGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGA
EST: gi|148966792|gb|EE017885.2|EE017885
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211280856|gb|FK954654.1|FK954654
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|94479717|gb|EB708675.1|EB708675
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|149033876|gb|EE155017.2|EE155017
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211275431|gb|FK954604.1|FK954604
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGA-GTTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 209

TCGCCCGGGGGCCGCAGGGTACGAGCCGCGTTGCCTTCGGACCAGCGCCCAGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGACTTTTGGAGAGA


Block sizes: 40 (upstream exon), 45 (downstream exon)
Score: 38

TCGCCCGGGGGCCGCAGGGTACGAGCCGCGTTGCCTTCGGACCAGCGCCCAGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGACTTTTGGAGAGA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 25

TCGCCCGGGGGCCGCAGGGTACGAGCCGCGTTGCCTTCGGACCAGCGCCCAGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGACTTTTGGAGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2007

TCGCCCGGGGGCCGCAGGGTACGAGCCGCGTTGCCTTCGGACCAGCGCCCAGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGACTTTTGGAGAGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattgaagggacacttatcattctttactttaatggtgcactacttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGACTTTTGGAGAGA
                             ctttaat  putative branch site (score: 2007)
                                          ctactttt  putative PPT
                     attctttactttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcttgatttttttcttttgaataaacccacttttagttatattgattgattgaagggacacttatcattctttactttaatggtgcactacttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACAAGTTTTGATTAGACTAGAAGACAGCATCATATTTGGACTTTTGGAGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA