1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctcctcctccactgccttcctgtttttaaacagggagaggggtggccctccgctagccgcacggatcctctccatcctcaccgtttcttcctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG
species | Zea mays |
transcript | GRMZM2G115939_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211162273|gb|FL345451.1|FL345451
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAGGCSGTTCCACGCTCCTCCAGCGAGCTCCGEST: gi|211505256|gb|FL326165.1|FL326165
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
EST: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGG GTCTCTTAGTGCAAGCAAGGAAGCCGTTCCACGCTCCTCCAGCGAGCTCCG
genomic: CTCGTCCTCTCGCCCACCGGCGAAAAACCGTTCCCCTCTGCCGTTTCCGGgtgagtctac ... ctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCG
ccctccgctagccgcacggatcctctccatcctcaccgtttcttcctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG
tcctcac putative branch site (score: 2)
tcctctccatcctcac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctcctccactgccttcctgtttttaaacagggagaggggtggccctccgctagccgcacggatcctctccatcctcaccgtttcttcctctctgcagGTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC