1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtagaccccctcccccggcctcgattttccgtcgaggcacgacccgcgcagcgggctctgatccgatccgatccgatctgacatttgtgtttcgcagCCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAG
species | Zea mays |
transcript | GRMZM2G115757_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTTCTTCTCTGTTTCCTACTCGCCGCCTCCGCGCCGCTGATCGTCG CCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAGEST: gi|211297386|gb|FL321262.1|FL321262
genomic: GCAGCTTCTTCTCTGTTTCCTACTCGCCGCCTCCGCGCCGCTAATCGTCGgtgagtagac ... tgtttcgcagCCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAG
EST: GCAGCTTCTTCTCTGTTTCCTACTCGCCGCCTCCGCGCCGCTAATCGTCG CCACGGCCAAGAAATCCGGGGACGTGTCGEST: gi|211211874|gb|FL151949.1|FL151949
genomic: GCAGCTTCTTCTCTGTTTCCTACTCGCCGCCTCCGCGCCGCTAATCGTCGgtgagtagac ... tgtttcgcagCCACGGCCAAGAAATCCGGGGACGTGTCG
EST: GCAGCTTCTTCTCTGTTTCCTACTCGCCGCCTCCGCGCCGCTAATCGTCG CCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAGEST: gi|14701389|gb|BI233807.1|BI233807
genomic: GCAGCTTCTTCTCTGTTTCCTACTCGCCGCCTCCGCGCCGCTAATCGTCGgtgagtagac ... tgtttcgcagCCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAG
EST: GCAGCTTCTTCTCTGTTTCCTACTCGCCGCCTCCGCGCCGCTAATCGTCG CCACGGCCAAGAAATCCGGGGACGCTGTCGGAGCTCCAGATCGGCGTCAAG
genomic: GCAGCTTCTTCTCTGTTTCCTACTCGCCGCCTCCGCGCCGCTAATCGTCGgtgagtagac ... tgtttcgcagCCACGGCCAAGAAATCCGGGGACG-TGTCGGAGCTCCAGATCGGCGTCAAG
cccgcgcagcgggctctgatccgatccgatccgatctgacatttgtgtttcgcagCCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAG
atctgac putative branch site (score: 252)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagaccccctcccccggcctcgattttccgtcgaggcacgacccgcgcagcgggctctgatccgatccgatccgatctgacatttgtgtttcgcagCCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT