1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaggacgacggacggacagacggacagacctgctgctcttcattttcattctatttcggtttcggaggcggaacggcatgaatctgctgtattgttcgttggccactaccacgaaccgtccctgaactccagaaatccctcctccgtagGACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTCGTCGCACGTCTCGCTCGCCTCCGAGGCGGAGATCAACCTCGACCTGTCG
species | Zea mays |
transcript | GRMZM2G115451_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCG GACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTCEST: gi|149084470|gb|EE173928.2|EE173928
genomic: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCGgtaaggacga ... tcctccgtagGACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTC
EST: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCG GACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTCEST: gi|211119877|gb|FL246653.1|FL246653
genomic: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCGgtaaggacga ... tcctccgtagGACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTC
EST: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCG GACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTCEST: gi|78087480|gb|DV515873.1|DV515873
genomic: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCGgtaaggacga ... tcctccgtagGACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTC
EST: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCG GACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTCEST: gi|93284707|gb|EB676971.1|EB676971
genomic: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCGgtaaggacga ... tcctccgtagGACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTC
EST: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCG GACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTCEST: gi|211417834|gb|FL246648.1|FL246648
genomic: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCGgtaaggacga ... tcctccgtagGACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTC
EST: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCG GACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTC
genomic: CCAGTGCGCGCGCAGTGAGCATCAACATCAACCCGCCTCTTCTCTCGTCGgtaaggacga ... tcctccgtagGACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTC
ttcgttggccactaccacgaaccgtccctgaactccagaaatccctcctccgtagGACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTCGTCGCACGTCTCGCTCGCCTCCGAGGCGGAGATCAACCTCGACCTGTCG
tccctcctccgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggacgacggacggacagacggacagacctgctgctcttcattttcattctatttcggtttcggaggcggaacggcatgaatctgctgtattgttcgttggccactaccacgaaccgtccctgaactccagaaatccctcctccgtagGACCGGCGCGCGCCAGGTGGCGGCGGAGGCGGCAGGCATGAAGCGGGTGTCGTCGCACGTCTCGCTCGCCTCCGAGGCGGAGATCAACCTCGACCTGTCG
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