Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgagctgccgcgtcctctcttggatttggggctttagcttctgtcatttgcgcttgtttcagctcgtgggttgctaatattgttggctgttgtcgcggtgcttttcctcgtgggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT

Basic information

species Zea mays
transcript GRMZM2G115049_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115049_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g45950.1 (Oryza sativa), 3'ss of exon 1
-------------------------gttcgagctgccgcgtcctctcttggatttggggcttta-gcttctgtcat--ttgcgcttgtttcagctcgtgggttgctaatat---tgttggctgttgtcgcggtgcttttcctcgtgggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT
                         ||||    ||  | ||  | |  |||  |||||| |||  | || |||     ||  |||||     | |  | |||| ||    |   || || |  | || |   |  |||||     || |  ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
gttcggggatgctgcgtcgttgctggttctttttgtggggtgtttttgtgg--ttggggttttgtgattttgttgcccttttgcttggggttgtttcttggtttcttgggtgtttgctgacgctggttgttttttttttctggtgggatttgcagATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCGAACGGAGCT

upper sequence: GRMZM2G115049_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA18G49070.1 (Glycine max), 3'ss of exon 1
gttcgagctgccgcgtcctctcttggatttggggctttagcttctgtcatttgcgcttgtttcagctcgtgggtt----gctaatattgttggctg---ttgtcgcggtgcttttcctcgtgggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT-
       ||  | |    | | ||| | ||     ||  | || | |     | |     ||   | |   ||||    | | ||  | || | ||      |    | | ||||  | ||  |   | |||||| || |  |||||||||||||  ||||||||||||||  ||||||||||| |  | |  |||| | 
-----tactctctctaattgtgttgaaattctaaattatgatttttttgggggtgtagaatttttccctacggttaaaagttgatgctttttgatgaatcctttaatgggtttttgtttgtttggt-gtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCGACTGGAGTTG

upper sequence: GRMZM2G115049_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G37570.1 (Glycine max), 3'ss of exon 1
--------gttcgagctgccgcgtcctctcttggatttggggctttagcttctgtcatttgcgcttgtttcagctcgtgggttgctaatattgttggctg--ttgtcgcggtgcttttcctcgtgggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT
          || |  |     |   |    |  | ||| || |||    | ||     |    || || |     ||       |  |  | || | ||  |  |    | | ||||  | ||  |   | |||||| || |  |||||||||||||  ||||||||||||||  ||||||||||| |  |||  |||| |
gtactctctctctaattatgttgaaattctattaaattgtggtttt----tttggggggtagaatttttccttactgttaaaaattggtgctttttgatgaatcctaaatgggtttttgtttgtttggt-gtagATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348128|gb|DN215101.1|DN215101
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211069746|gb|FL326276.1|FL326276
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211067138|gb|FL332478.1|FL332478
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211118967|gb|FL349445.1|FL349445
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211282848|gb|FL309040.1|FL309040
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|60349522|gb|DN216495.1|DN216495
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|149083876|gb|EE173252.2|EE173252
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|101387379|gb|EB815705.1|EB815705
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211455059|gb|FL323071.1|FL323071
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|71436182|gb|DR817232.1|DR817232
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211463261|gb|FL358480.1|FL358480
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211462556|gb|FL333206.1|FL333206
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|15545704|gb|BI643498.1|BI643498
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|149014219|gb|EE043774.2|EE043774
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|149081524|gb|EE170660.2|EE170660
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|149108403|gb|EE292740.2|EE292740
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|76282636|gb|DV022204.1|DV022204
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211455392|gb|FL341711.1|FL341711
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211505801|gb|FL357190.1|FL357190
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|91056164|gb|EB166582.1|EB166582
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211500080|gb|FL310132.1|FL310132
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|29130483|gb|CB381187.1|CB381187
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|76917796|gb|DV167007.1|DV167007
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|71303230|gb|DR787717.1|DR787717
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|37424398|gb|CF649931.1|CF649931
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|101395788|gb|EB819821.1|EB819821
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211095737|gb|FL312081.1|FL312081
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACMRGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|9794381|gb|BE552689.1|BE552689
EST:     GGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|71448665|gb|DR829715.1|DR829715
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|32909156|gb|CF013968.1|CF013968
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         TTCTTCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|74241152|gb|DT649066.1|DT649066
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|71430935|gb|DR811985.1|DR811985
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|148963152|gb|EE014121.2|EE014121
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|149080662|gb|EE169719.2|EE169719
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|32906855|gb|CF011668.1|CF011668
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTTCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211342710|gb|FL349130.1|FL349130
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211512108|gb|FL316104.1|FL316104
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|149013973|gb|EE043481.2|EE043481
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|93012482|gb|EB638002.1|EB638002
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|76289467|gb|DV029035.1|DV029035
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211399297|gb|FL337150.1|FL337150
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAKAAGGCCAGAG                         ATCTCCTATATAAGGACTACMACACGGACCAGAAGWTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|213191071|gb|FM193242.1|FM193242
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTTCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|91873213|gb|EB403170.1|EB403170
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|50327068|gb|CO522194.1|CO522194
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|149107027|gb|EE188922.2|EE188922
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|148950071|gb|EC895603.2|EC895603
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|71757445|gb|DR955382.1|DR955382
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|50325873|gb|CO520999.1|CO520999
EST:     GGCCGCCGCGGGTCCCGGGGTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|149112693|gb|EE295526.2|EE295526
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|78111026|gb|DV529423.1|DV529423
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|32907264|gb|CF012077.1|CF012077
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTTCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|78109070|gb|DV527487.1|DV527487
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|60341814|gb|DN208787.1|DN208787
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|15590470|gb|BI675086.1|BI675086
EST:     GGCCGCCGCGGGTGCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211033926|gb|FL358169.1|FL358169
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|101390351|gb|EB817110.1|EB817110
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: gi|211222771|gb|FL342810.1|FL342810
EST:     GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAG                         ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: GGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 494

ACCTACTCGCCGCCGGCGCCGTCTCAGCCTCATCCTTCTCCGCTAGCCATGGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 236

ACCTACTCGCCGCCGGCGCCGTCTCAGCCTCATCCTTCTCCGCTAGCCATGGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 189

ACCTACTCGCCGCCGGCGCCGTCTCAGCCTCATCCTTCTCCGCTAGCCATGGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1437

ACCTACTCGCCGCCGGCGCCGTCTCAGCCTCATCCTTCTCCGCTAGCCATGGCCGCCGCGGGTCCCGGGCTCTACTCCGAGATCGGGAAGAAGGCCAGAGgttcgagctg ... gggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggttgctaatattgttggctgttgtcgcggtgcttttcctcgtgggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT
     tgctaat  putative branch site (score: 1437)
        taatattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgagctgccgcgtcctctcttggatttggggctttagcttctgtcatttgcgcttgtttcagctcgtgggttgctaatattgttggctgttgtcgcggtgcttttcctcgtgggtccgcagATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT