1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agttacactacattacagctgctgctgtatgtgtgccggtaacttcagagataacaaatgatcagtgtcgcttactcactactcatctgtatatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGACCGTGATCGGTATCGATCTCGGTACCACCTACTCCTGTGTCGGTGTGTA
species | Zea mays |
transcript | GRMZM2G114793_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|148933724|gb|EC877639.2|EC877639
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211043418|gb|FL322281.1|FL322281
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTGCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211399188|gb|FL334000.1|FL334000
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211287645|gb|FL366221.1|FL366221
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|149079422|gb|EE168400.2|EE168400
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211367929|gb|FL353366.1|FL353366
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTGCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|148947395|gb|EC892803.2|EC892803
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211153937|gb|FL327665.1|FL327665
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211437934|gb|FL338200.1|FL338200
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211103710|gb|FL338318.1|FL338318
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211537351|gb|FL321049.1|FL321049
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211272691|gb|FL347693.1|FL347693
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGTTCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211465040|gb|FL331928.1|FL331928
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCATAGAGGAGACCAAGAAGCTCGGGAEST: gi|211330810|gb|FL315986.1|FL315986
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211335770|gb|FL352931.1|FL352931
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211444899|gb|FL349603.1|FL349603
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCATAGAGGAGACCAAGAAGCTCGGGAEST: gi|148990654|gb|EE032048.2|EE032048
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211362047|gb|FL326991.1|FL326991
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|148957724|gb|EC903848.2|EC903848
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211100817|gb|FL317192.1|FL317192
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211154539|gb|FL360791.1|FL360791
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211198013|gb|FL335635.1|FL335635
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|211220897|gb|FL350387.1|FL350387
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGAEST: gi|101399980|gb|EB821837.1|EB821837
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
EST: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
genomic: CATGGATCGGGCTCGCGGATCCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtacctacca ... atatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGA
cagagataacaaatgatcagtgtcgcttactcactactcatctgtatatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGACCGTGATCGGTATCGATCTCGGTACCACCTACTCCTGTGTCGGTGTGTA
tactcac putative branch site (score: 434)
ataacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttacactacattacagctgctgctgtatgtgtgccggtaacttcagagataacaaatgatcagtgtcgcttactcactactcatctgtatatatgcagGATCCTTGTTCGCGTTTTCAGTTGCCAAAGAGGAGACCAAGAAGCTCGGGACCGTGATCGGTATCGATCTCGGTACCACCTACTCCTGTGTCGGTGTGTA
- - -cactaca
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- - - - - - - - -gctgctg
- - - - - - - - - - - - - - - -tgtgccg
- - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa