1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatttccaccccttctcttcccttcctgacgttcgaaaccgagcacccaaatcctaacctaagctatttggctatttgatgtctacttccttgaaccttttgcaaacattatcgggtacatgtgttagGGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCATCCTCATCGTCTTCGCGCCGCACCAAGCAAGAAGCCTCGTG
species | Zea mays |
transcript | GRMZM2G114758_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCCTACGCCAGGTGCTGAGGTCTTCGTCGATCTCGAGCTCCCACAAG GGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCATEST: gi|26456351|gb|CA827934.1|CA827934
genomic: CCGCCCTACGCCAGGTGCTGAGGTCTTCGTCGATCTCGAGCTCCCACAAGgtatttccac ... catgtgttagGGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCAT
EST: -CGCCCTACGCCAGGTGCTGAGGTCTTCGTCGATCTCGAGCTCCCACAAG GGAAGCTGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCATEST: gi|211261561|gb|FL168251.1|FL168251
genomic: CCGCCCTACGCCAGGTGCTGAGGTCTTCGTCGATCTCGAGCTCCCACAAGgtatttccac ... catgtgttagGGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCAT
EST: CCGCCCTACGCCAGGTGCTGAGGTCTTCGTCGATCTCGAGCTCCCACAAG GGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCATEST: gi|76937011|gb|DV175004.1|DV175004
genomic: CCGCCCTACGCCAGGTGCTGAGGTCTTCGTCGATCTCGAGCTCCCACAAGgtatttccac ... catgtgttagGGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCAT
EST: CCGCCCTACGCCAGGTGCTGAGGTCTTCGTCGATCTCGAGCTCCCACAAG GGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCATEST: gi|60347651|gb|DN214624.1|DN214624
genomic: CCGCCCTACGCCAGGTGCTGAGGTCTTCGTCGATCTCGAGCTCCCACAAGgtatttccac ... catgtgttagGGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCAT
EST: CGATCTCGAGCTCCCACAAG GGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCAT
genomic: CGATCTCGAGCTCCCACAAGgtatttccac ... catgtgttagGGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCAT
atttgatgtctacttccttgaaccttttgcaaacattatcgggtacatgtgttagGGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCATCCTCATCGTCTTCGCGCCGCACCAAGCAAGAAGCCTCGTG
atttgat putative branch site (score: 89)
aaacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttccaccccttctcttcccttcctgacgttcgaaaccgagcacccaaatcctaacctaagctatttggctatttgatgtctacttccttgaaccttttgcaaacattatcgggtacatgtgttagGGAAGCCGTCCAGGATGGGATACAACCGCCACAGGCGTGGCCGGGGATCATCCTCATCGTCTTCGCGCCGCACCAAGCAAGAAGCCTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC