1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtgtcttcgatccggcgtcttctcctcccccgattgtcccgggatctttttccgacctaagtttgggcggttgctccaaaccctagtctctccctctgctaggctagccagtggtgtgctggggcgctggagcagccttggatctgcgggttttgattggtgtctcctcgcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCAAGGAGCGACACCTGCGAA
species | Zea mays |
transcript | GRMZM2G114513_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211097837|gb|FL067788.1|FL067788
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211079577|gb|FL056323.1|FL056323
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211097840|gb|FL067791.1|FL067791
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211092899|gb|FL067769.1|FL067769
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211095361|gb|FL067770.1|FL067770
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|21760018|gb|BQ635559.1|BQ635559
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211095370|gb|FL067779.1|FL067779
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211095362|gb|FL067771.1|FL067771
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCAATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211095368|gb|FL067777.1|FL067777
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211092898|gb|FL067768.1|FL067768
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211092897|gb|FL067767.1|FL067767
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211097835|gb|FL067786.1|FL067786
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211095373|gb|FL067782.1|FL067782
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211095375|gb|FL067784.1|FL067784
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|9254928|gb|BE345396.1|BE345396
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211097834|gb|FL067785.1|FL067785
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211095371|gb|FL067780.1|FL067780
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211095369|gb|FL067778.1|FL067778
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCEST: gi|211095366|gb|FL067775.1|FL067775
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
EST: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAG GATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
genomic: TCAAGGACACCACAACCGTTAGCCTCGCCAACCTCAACTCGGACTTCAAGgtgtgtcttc ... gcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCC
cgctggagcagccttggatctgcgggttttgattggtgtctcctcgcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCAAGGAGCGACACCTGCGAA
ttttgat putative branch site (score: 4)
tgtctcctcgctttt putative PPT
ttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtcttcgatccggcgtcttctcctcccccgattgtcccgggatctttttccgacctaagtttgggcggttgctccaaaccctagtctctccctctgctaggctagccagtggtgtgctggggcgctggagcagccttggatctgcgggttttgattggtgtctcctcgcttttgtagGATCTGGATGTGGCGATCGTGAAGGCGACTAATCACGTGGAGTGCCCACCCAAGGAGCGACACCTGCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG