1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tattgatcacggcaccttttcactgtgtatttacatcaatggctgtttcttttcaagtctagcagctgtgctcacgcaacttcgtgttatttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
species | Zea mays |
transcript | GRMZM2G114220_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211389874|gb|FL156779.1|FL156779
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211389876|gb|FL156781.1|FL156781
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA --G-TTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211389878|gb|FL156783.1|FL156783
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211392499|gb|FL156788.1|FL156788
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211392496|gb|FL156785.1|FL156785
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211389879|gb|FL156784.1|FL156784
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|50338446|gb|CO533572.1|CO533572
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGT-- CA-GTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211392507|gb|FL156796.1|FL156796
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211392498|gb|FL156787.1|FL156787
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|76909136|gb|DV163240.1|DV163240
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGT-- CA-GTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|6637070|gb|AW261342.1|AW261342
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGT-- CA-GTTGAGGGAAGTTGAAGCAAAAGTCTAACCAAAAATGEST: gi|211392509|gb|FL156798.1|FL156798
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGEST: gi|71417924|gb|DR804257.1|DR804257
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGT-- CA-GTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211392504|gb|FL156793.1|FL156793
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211392503|gb|FL156792.1|FL156792
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|91049005|gb|EB159423.1|EB159423
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|32859779|gb|CD999460.1|CD999460
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|32862738|gb|CF002420.1|CF002420
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGT-- CA-GTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211395124|gb|FL156801.1|FL156801
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211392510|gb|FL156799.1|FL156799
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211395123|gb|FL156800.1|FL156800
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GDNCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211392502|gb|FL156791.1|FL156791
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211389877|gb|FL156782.1|FL156782
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|91873355|gb|EB403312.1|EB403312
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|14242735|gb|BG840580.2|BG840580
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: CAAGATTCCAAGCTCTTCTGTCA CAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|213183590|gb|FM196389.1|FM196389
genomic: CAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGT-- CA-GTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATGEST: gi|211392508|gb|FL156797.1|FL156797
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCA --G-TTGAGGGAAGTTGAAGCAAAAGTCTAA-CAAAAAATGEST: gi|93015584|gb|EB641104.1|EB641104
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAA-TG
EST: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGT-- CA-GTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
genomic: GATCGCCGTCTCGAAGGAGCTGAAATCCAAGATTCCAAGCTCTTCTGTCAgtaaggaacc ... ttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
tttcttttcaagtctagcagctgtgctcacgcaacttcgtgttatttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
tgctcac putative branch site (score: 2)
tttgttc putative PPT
ttatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgatcacggcaccttttcactgtgtatttacatcaatggctgtttcttttcaagtctagcagctgtgctcacgcaacttcgtgttatttgttcatagCAGGTTGAGGGAAGTTGAAGCAAAAGTCTAAGCAAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - -cggcacc
- - - - - - - - - ttcactg
- - - - - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcaa