Sequence
atgc intronic sequence ATGC exonic sequencegtgcgccctccgctccatctacctcatcccagctccagggtcacgggcgtacatggtacatagctcgtcgctgactcttcccttaatcgacacgacacgtgcagAAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTCCCCTGCTTCGGCCTGCACCCTTGGTGAGAGTTGAGGTTCCCCTGCTTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G114131_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g48820.2 (Oryza sativa), 3'ss of exon 1
gtgcgccctccgctccatctacctcatcccagctccagggtcacgggcgtacatggtacatagctcgtcgctgactcttcccttaatcgacacgacacgtgcagAAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTCCCCTGCTTCGGCCTGCACCCTTGGTGAGAGTTGAGGTTCCCCTGCTTGC
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------------------gtatgctcccgcgcctacctcgt-gcgagaacacggggggaatctctcctcgctgactcttgtct-actggataag---cgcgcagAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATG--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74238219|gb|DT646133.1|DT646133EST: CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAG AAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
genomic: CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAGgtgcgccctc ... acacgtgcagAAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacatggtacatagctcgtcgctgactcttcccttaatcgacacgacacgtgcagAAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTCCCCTGCTTCGGCCTGCACCCTTGGTGAGAGTTGAGGTTCCCCTGCTTGC
ttaat TA-rich tract