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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcatcatcaccgtatctaggctatgagaatgcagctagaaacgttttgtttatggtctaacacgaacgcaaattttttttgtgtgtgcttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAGGATATGCAAGGGATCCCCTGGAACGTGATGCCGACTACAAGGGACAAGT

Basic information

species Zea mays
transcript GRMZM2G113726_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211200071|gb|FL195838.1|FL195838
EST:     ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCT                         ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: gi|211202620|gb|FL195840.1|FL195840
EST:     ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCT                         ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: gi|211200072|gb|FL195839.1|FL195839
EST:     GCCACGCCGTTCGAATGGATGGCTCCGACGACGATGAGCTGGACCAACCT                         ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
genomic: GCCACGCCGTTCGAATGGATGGCT-C--CGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: gi|5555361|gb|AI881312.1|AI881312
EST:     ACCGCCACGCCGTTCGAATGGATGGCTCCGACGCTGAGCTGGACCAACCT                         ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: gi|211200069|gb|FL195836.1|FL195836
EST:     ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCT                         ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: gi|60349121|gb|DN216094.1|DN216094
EST:     ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAA-C-                         -C---T----CGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: gi|32919928|gb|CF024740.1|CF024740
EST:     ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCT                         ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: gi|60398028|gb|DN230844.1|DN230844
EST:     ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCT                         ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtttatggtctaacacgaacgcaaattttttttgtgtgtgcttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAGGATATGCAAGGGATCCCCTGGAACGTGATGCCGACTACAAGGGACAAGT
           gtctaac  putative branch site (score: 2)
                                            cttgttt  putative PPT
                          aaattttttttgtgt  TA-rich tract