Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211050250|gb|FL241531.1|FL241531EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST:
gi|211270650|gb|FL248440.1|FL248440EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGC
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGC
EST:
gi|211270647|gb|FL248437.1|FL248437EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTAT
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTAT
EST:
gi|211047308|gb|FL241530.1|FL241530EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttttgccaccaatggcgtgtttttttacaacgagatggcgttgttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATG
atctgac putative branch site (score: 3)
tttttttacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactgctgactgcgccaccgccaccgcccccacctcttgggtggcctttctttcttcctttctcgtaccctgctcgatttcgcctcgcccaaccccgacaaaagggagggggaaaagcggaggagtatctgacttttgccaccaatggcgtgtttttttacaacgagatggcgttgttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG