1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcggtctggtgcaagtggcaatcagatattaaaattctactattacgatttgatgttcacttagctttatcatattcatgttgatttgataaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA
species | Zea mays |
transcript | GRMZM2G113640_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATG GCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCEST: gi|78110824|gb|DV529222.1|DV529222
genomic: TGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATGgttagtgctg ... aaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGC
EST: TGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATG GCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGC
genomic: TGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATGgttagtgctg ... aaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGC
cgatttgatgttcacttagctttatcatattcatgttgatttgataaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA
ttgatttgataaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcggtctggtgcaagtggcaatcagatattaaaattctactattacgatttgatgttcacttagctttatcatattcatgttgatttgataaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG