1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactgctgactgcgccaccgccaccgcccccacctcttgggtggcctttctttcttcctttctcgtaccctgctcgatttcgcctcgcccaaccccgacaaaagggagggggaaaagcggaggagtatctgacttttgccaccaatggcgtgtttttttacaacgagatggcgttgttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATG
species | Zea mays |
transcript | GRMZM2G113640_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCEST: gi|211270654|gb|FL248444.1|FL248444
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGC
EST: TCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|71438832|gb|DR819882.1|DR819882
genomic: TCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|211270652|gb|FL248442.1|FL248442
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|211270647|gb|FL248437.1|FL248437
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATEST: gi|211270657|gb|FL248447.1|FL248447
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTAT
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|211270656|gb|FL248446.1|FL248446
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|76012002|gb|DT939172.1|DT939172
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|211270651|gb|FL248441.1|FL248441
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCR-CGGGGCCCTCACATCGCGTCGCGGATGCTEST: gi|211270648|gb|FL248438.1|FL248438
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGG-CCCTCACATCGCGTCGCGGATGCT
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|50327796|gb|CO522922.1|CO522922
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|211270649|gb|FL248439.1|FL248439
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|211270646|gb|FL248436.1|FL248436
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|211050250|gb|FL241531.1|FL241531
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCEST: gi|211270655|gb|FL248445.1|FL248445
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
EST: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAG CTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
genomic: AGCAGCTGGAGGGCCTCTTGGGTGGCCTGACCCAGTTCTCCGACCCCAAGgtactgctga ... ttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTC
acttttgccaccaatggcgtgtttttttacaacgagatggcgttgttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATG
atctgac putative branch site (score: 3)
tttttttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgctgactgcgccaccgccaccgcccccacctcttgggtggcctttctttcttcctttctcgtaccctgctcgatttcgcctcgcccaaccccgacaaaagggagggggaaaagcggaggagtatctgacttttgccaccaatggcgtgtttttttacaacgagatggcgttgttgggtgtagCTGGAGCTGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG