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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctttatcacagttatcttttattcttttccatggaactgaaattttgtattatagctcatagtttttgtgtttgtaacctttgtaatcctattttgcagATTGCTTGGGGAGGCGAATAGGGCCTAGTTTCCTTGGTAGGCAGGGAGGTGATTCTACA

Basic information

species Zea mays
transcript GRMZM2G113506_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113506_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g11330.1 (Oryza sativa), 3'ss of exon 1
gctttatcacagttatcttttattcttttccatggaactgaaattttgtatt--atagctcatagtttttgtgt-ttgtaacctttgtaatcct-attttgcagATTGCTTGGGGAGGCGAATAGGGCCTAGTTTCCTTGGTAGGCAGGGAGGTGATTCTACA
  | || |  ||  |  || ||  | | ||     |||||| ||||   |||   | |||    |  |   | | || |||   ||| | |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  
tatataccttagacaggttatacacctctc----aaactgatatttacaattcagttgcttgatgcatcaatttgttctaagtattgcattttttgttttgcagATTGCTTGGGGAGGCGAATAGGGCCTAGTTTCCTTGGTAGGCAGGGGGGTGATTCTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtattatagctcatagtttttgtgtttgtaacctttgtaatcctattttgcagATTGCTTGGGGAGGCGAATAGGGCCTAGTTTCCTTGGTAGGCAGGGAGGTGATTCTACA
                           ttgtaac  putative branch site (score: 2)
                                          tcctatttt  putative PPT
              atagttttt  TA-rich tract