1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctattactcggaggcatcactgtatttacctaactaagccatgcacatctttttgaatggtatgagtatgacaacattgattttactggtcctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGTTAGACCTCAAGGATTCCTGCTGGAGATTTTTAAGGCCACATACAATCC
species | Zea mays |
transcript | GRMZM2G113476_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG GAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGEST: gi|149081784|gb|EE170939.2|EE170939
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG GAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGEST: gi|71445925|gb|DR826975.1|DR826975
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG GAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGEST: gi|89250617|gb|DY622403.1|DY622403
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG GAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGEST: gi|101389442|gb|EB816675.1|EB816675
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG GAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGEST: gi|148973603|gb|EE024711.2|EE024711
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG GAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGEST: gi|148991565|gb|EE033091.2|EE033091
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG GAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
catctttttgaatggtatgagtatgacaacattgattttactggtcctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGTTAGACCTCAAGGATTCCTGCTGGAGATTTTTAAGGCCACATACAATCC
cattgat putative branch site (score: 4)
tcctcttgc putative PPT
attgatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattactcggaggcatcactgtatttacctaactaagccatgcacatctttttgaatggtatgagtatgacaacattgattttactggtcctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGTTAGACCTCAAGGATTCCTGCTGGAGATTTTTAAGGCCACATACAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT