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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtataagataagcgtgcattatcagcaagcttacgcttacctgtgcctgctcctcaacaacgtcgatcgaagctgatgacacgtgtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC

Basic information

species Zea mays
transcript GRMZM2G113349_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113349_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g31690.1 (Oryza sativa), 3'ss of exon 1
-------------------gtaagtataagataagcgtgcattatcagcaagcttacgcttacctgtgcctgctcctcaacaacgtcgatcgaagctgatgaca-cgtgtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC
                    || |  || | |    | ||   ||   ||||   | | |         |   |    |   | ||    |   ||   ||    |  |   | | ||||||| ||||||||||||  ||| | |||||| |||| ||||||||| ||||| ||||||||| ||||||||||||| || |||||||||||||||||||
gtaagaccttaattaggatttaggagtatgttgcatg-gcgccatggccaaggccaaggtggaaacgatcgaattactatatatgtaacgccgtgcatgtggtggccggccggtgtagGGCGCCAGCGCGGAGGGCGTGCCGAGGAGGCTTACCTTCGACGAGATTCAGAGTAAGACGTACATGGAGGTGAAGGGAACCGGCACGGCGAACCAGTGCC

upper sequence: GRMZM2G113349_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA11G06510.1 (Glycine max), 3'ss of exon 1
-----gta-agtataagataagcgtgcattatcagcaagcttacgcttacctgtgcctgctcctcaacaacgtcgatcgaagctgatgacacgtgtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC
     ||  | || |  |||   ||  ||       ||   ||  |  |    |   || |  | || ||   |    |    || ||    || | |   ||||| || || || || ||    || || ||||| |||| |||||| |||||||||||||| ||| |||| |||||||| || || || || ||||||||||
atgttgtgcaatagattatacaagtaaatgggagagaaa--tagacacaaaaatagttgttatttaagaatagcacaagtgattggtgtt--gtatatattcagGGAGCAAGTGCAGAAGGTGTTCCAAAAAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAACCAGTGCC

upper sequence: GRMZM2G113349_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G25860.1 (Glycine max), 3'ss of exon 1
-gtaagtataagataagcgtgcattatcagcaagcttacgctt---acctgtgcctgctcctcaacaacgtcgatcgaagctgatgacacgtgtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC
 | ||  |    | || |    ||||  ||      || | ||   ||       |  |    |    | | |  |    || |     |  |       |||| || || || || ||    || |||||||| |||| |||||| |||||||||||||| ||| |||| |||||||| || || || || ||||||||||
agaaaacacccaa-aaacacctattaa-agtgtatctaagttttgtactcacttttaattactattggcattgtacatgactaactgagcaaggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACCTACTTGGAAGTGAAGGGGACAGGAACAGCAAACCAGTGCC

upper sequence: GRMZM2G113349_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G38750.1 (Glycine max), 3'ss of exon 1
gtaagtataagataagcgtgcattatcagcaagcttacgcttacctgtgcctgctcctcaacaacgtcgatcgaa-gctgatgacacgtgtgtgcg--cagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC
   |  |||||| ||    | |  |   | || |  | | |  |  |    |       || |  || |   |||     | |     ||| | |   ||||| ||||| || || ||    || |||||||| |||| |||||| |||||||||||||| ||| |||| |||||||| || || || || || |||||||
aacaaaataagagaaagaagtaagagatgtaa-caaaagatggcagggaaatagaaacaaaaatagttgtatgaataacaagggtgattgtatacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC

upper sequence: GRMZM2G113349_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT5G66570.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagtataagataagcgtgcattatcagcaagcttacgcttacctgtgcctgctcc-tcaacaacgtcgatcgaa----gctgatgacacgtgtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC
  ||     |    |   |   | |||  | |  | | |   |      | |  |   |||   |  | |||  ||    |||  |  | |||||      |||| || || ||||||||  | || |||||  ||||||| || ||||| ||||||||||| ||| |||| ||||| || || || ||||| ||||||||||
-aaaccgctattccaat-tctgtaatcttcga-ttcatgtagatacaatcttcttggatcagtgagtttgatttaaagttgcttgtttctcgtgtaatgaaagGGAGCAAGTGCGGAGGGAGCTCCAAAGAGATTGACCTATGATGAGATTCAGAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCC

upper sequence: GRMZM2G113349_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G50820.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagtataagataagc-gtgcattatcagcaagcttacgcttacctgtgcctgctcctcaacaacgtcga----tcgaagctgatgacacgtgtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC
||   || | | |  |   ||    |  |  |    || | |||| | ||| || |  |   ||| ||| |    |   | |  |||    | ||    | |||| ||  | ||||||||  | || |||||||| || ||||||||||| ||||||||||| ||| ||||||| ||||| || || ||||| |||||||| |
gtgtatagaggttttgttatgtcacagtaatatatgta-gattacat-tgcatgtttatttgcaaagtctagtatttttaacctatgttttgggta-atgaagGGGGCCGGTGCGGAGGGAGCACCAAAGAGGCTAACGTACGACGAGATACAGAGCAAGACTTACATGGAGGTAAAGGGTACCGGTACGGCAAACCAGTGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101401882|gb|EB822574.1|EB822574
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211195771|gb|FL225613.1|FL225613
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289332|gb|FL225650.1|FL225650
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|91051469|gb|EB161887.1|EB161887
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|71447240|gb|DR828290.1|DR828290
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289322|gb|FL225640.1|FL225640
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|71446158|gb|DR827208.1|DR827208
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|78081166|gb|DV509578.1|DV509578
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289324|gb|FL225642.1|FL225642
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGA-CGCGGNAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCA
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGG-AGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCA
EST: gi|149045369|gb|EE047793.2|EE047793
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|71435782|gb|DR816832.1|DR816832
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|148959246|gb|EE010677.2|EE010677
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287182|gb|FL225629.1|FL225629
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|71771792|gb|DR969729.1|DR969729
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211195770|gb|FL225612.1|FL225612
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCSACCTCGGCGCTCCTCGTCTCG                         GGCGCGA-CGCGGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCA
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGG-AGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCA
EST: gi|71430736|gb|DR811786.1|DR811786
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|37416682|gb|CF645994.1|CF645994
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCA
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCA
EST: gi|78114621|gb|DV533009.1|DV533009
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|93016791|gb|EB642311.1|EB642311
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287175|gb|FL225622.1|FL225622
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCKGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|149111444|gb|EE294946.2|EE294946
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287178|gb|FL225625.1|FL225625
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287184|gb|FL225631.1|FL225631
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287186|gb|FL225633.1|FL225633
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211195776|gb|FL225618.1|FL225618
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289331|gb|FL225649.1|FL225649
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289330|gb|FL225648.1|FL225648
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|101401885|gb|EB822575.1|EB822575
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|149097598|gb|EE183490.2|EE183490
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|71764741|gb|DR962678.1|DR962678
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287177|gb|FL225624.1|FL225624
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211291464|gb|FL225655.1|FL225655
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211195778|gb|FL225620.1|FL225620
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGA-CGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289328|gb|FL225646.1|FL225646
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|78085168|gb|DV513561.1|DV513561
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|71429924|gb|DR810974.1|DR810974
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|76282895|gb|DV022463.1|DV022463
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|71757687|gb|DR955624.1|DR955624
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289323|gb|FL225641.1|FL225641
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGA-CGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211195774|gb|FL225616.1|FL225616
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|88756871|gb|DY541012.1|DY541012
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|50332385|gb|CO527511.1|CO527511
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289326|gb|FL225644.1|FL225644
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|71426148|gb|DR807198.1|DR807198
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|149096253|gb|EE181961.2|EE181961
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|94474251|gb|EB703209.1|EB703209
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|37418902|gb|CF647124.1|CF647124
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211195773|gb|FL225615.1|FL225615
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCNCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287180|gb|FL225627.1|FL225627
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|15590019|gb|BI674635.1|BI674635
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|74245621|gb|DT653535.1|DT653535
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287188|gb|FL225635.1|FL225635
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGG-CACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|76931642|gb|DV172782.1|DV172782
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211195777|gb|FL225619.1|FL225619
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|89250756|gb|DY622542.1|DY622542
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287189|gb|FL225636.1|FL225636
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGA-CGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|149089850|gb|EE179129.2|EE179129
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289325|gb|FL225643.1|FL225643
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|76292164|gb|DV031732.1|DV031732
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211287179|gb|FL225626.1|FL225626
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|149110085|gb|EE293901.2|EE293901
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|149014684|gb|EE044354.2|EE044354
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|148944359|gb|EC889460.2|EC889460
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211195779|gb|FL225621.1|FL225621
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGASCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|89249254|gb|DY621040.1|DY621040
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|149070635|gb|EE159045.2|EE159045
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|101384286|gb|EB814187.1|EB814187
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|78103731|gb|DV522159.1|DV522159
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|148973300|gb|EE024383.2|EE024383
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|148946666|gb|EC891928.2|EC891928
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|50330724|gb|CO525850.1|CO525850
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|149103721|gb|EE289127.2|EE289127
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289320|gb|FL225638.1|FL225638
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCSACCTCGGCGCTCCTCGTCTCG                         GGCGCGAS-GCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|71768846|gb|DR966783.1|DR966783
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289329|gb|FL225647.1|FL225647
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|76285761|gb|DV025329.1|DV025329
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|211289327|gb|FL225645.1|FL225645
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|78114439|gb|DV532828.1|DV532828
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
EST: gi|91051961|gb|EB162379.1|EB162379
EST:     CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCG                         GGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG
genomic: CCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 63

GTGCTCCCTCCAGTCCGACGTCAGGGACGTCGCCAGCAAGTGCGTCGACGCCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1383

GTGCTCCCTCCAGTCCGACGTCAGGGACGTCGCCAGCAAGTGCGTCGACGCCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 8

GTGCTCCCTCCAGTCCGACGTCAGGGACGTCGCCAGCAAGTGCGTCGACGCCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 405

GTGCTCCCTCCAGTCCGACGTCAGGGACGTCGCCAGCAAGTGCGTCGACGCCGCCAAGCTCGCCGGCTTCGCGCTCGCCACCTCGGCGCTCCTCGTCTCGgtaagtataa ... gtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtgcctgctcctcaacaacgtcgatcgaagctgatgacacgtgtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC
                               agctgat  putative branch site (score: 405)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtataagataagcgtgcattatcagcaagcttacgcttacctgtgcctgctcctcaacaacgtcgatcgaagctgatgacacgtgtgtgcgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG