1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttctgccctgtatgttgtcaaaaatacatatgtcatatatacttagattcacactaaataaatgcaaatgtaaataatcgttatgtttctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG
species | Zea mays |
transcript | GRMZM2G112337_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|148947544|gb|EC893017.2|EC893017
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|149100805|gb|EE186899.2|EE186899
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|88756751|gb|DY540892.1|DY540892
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|101402372|gb|EB822761.1|EB822761
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|149070598|gb|EE159003.2|EE159003
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|211163234|gb|FL071799.1|FL071799
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCGCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|71773222|gb|DR971131.1|DR971131
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|71448830|gb|DR829880.1|DR829880
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|211382995|gb|FL318290.1|FL318290
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCGCCGGCGCCGG-GGCCCGTAAG -CTGCTGAGTGAAAATGGGAGTKGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|76014764|gb|DT941934.1|DT941934
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|149098530|gb|EE184516.2|EE184516
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|89761743|gb|DY689636.1|DY689636
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|89763679|gb|DY690773.1|DY690773
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|76289491|gb|DV029059.1|DV029059
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|148930867|gb|EC873288.2|EC873288
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|149078382|gb|EE167157.2|EE167157
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|148985938|gb|EE029851.2|EE029851
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|148975390|gb|EE025689.2|EE025689
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|148959723|gb|EC905625.2|EC905625
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|71435945|gb|DR816995.1|DR816995
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|148999825|gb|EE036849.2|EE036849
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|149096273|gb|EE181983.2|EE181983
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|148964767|gb|EC906024.2|EC906024
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|149081898|gb|EE171059.2|EE171059
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|148995698|gb|EE034921.2|EE034921
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|149015047|gb|EE044793.2|EE044793
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|71324224|gb|DR798815.1|DR798815
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|71306091|gb|DR789195.1|DR789195
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|71438424|gb|DR819474.1|DR819474
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|149088741|gb|EE177865.2|EE177865
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGEST: gi|148978442|gb|EE026170.2|EE026170
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCCATTGTTAGGT
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCC-ATTGTTAGGT
tagattcacactaaataaatgcaaatgtaaataatcgttatgtttctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG
cactaaa putative branch site (score: 2)
tgtttctcc putative PPT
taaataaatgcaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctgccctgtatgttgtcaaaaatacatatgtcatatatacttagattcacactaaataaatgcaaatgtaaataatcgttatgtttctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG