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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcacgcgccgccctctccctccccctctactgattagttgcttgcacccatcgggagtttgacgaaatgcttccgttcgtatcggcagGCTACGCGGCGAACAGGTACGCTACATCCTACAGTGTCCTGCAGGCTGCAGGCGGCGGCAGCGGTGCCAATCCGGCGAGGAAGGTTCGGGATTTTGTATT

Basic information

species Zea mays
transcript GRMZM2G112072_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241432|gb|DT649346.1|DT649346
EST:     GGATATCATCGCTCTGCGAGGCTCCGCCGCCATCGTCAGCGAGTTCTTCG                         GCTACGCGGCGAACAGGTACGCTACATCCTACAGTGTCCTGCAGGCTGCAG
genomic: GGATATCATCGCTCTGCGAGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtacgcacgc ... gtatcggcagGCTACGCGGCGAACAGGTACGCTACATCCTACAGTGTCCTGCAGGCTGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagttgcttgcacccatcgggagtttgacgaaatgcttccgttcgtatcggcagGCTACGCGGCGAACAGGTACGCTACATCCTACAGTGTCCTGCAGGCTGCAGGCGGCGGCAGCGGTGCCAATCCGGCGAGGAAGGTTCGGGATTTTGTATT
                       gtttgac  putative branch site (score: 4)