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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacctctgcccccctatccgctcgttctagatctcgatggatttatgcaaccgcgagcgcgaagattcttacacccggttccatttcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG

Basic information

species Zea mays
transcript GRMZM2G111713_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131767|gb|FL358660.1|FL358660
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211361987|gb|FL325579.1|FL325579
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211474664|gb|FL315663.1|FL315663
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211093125|gb|FL308869.1|FL308869
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211147018|gb|FL367795.1|FL367795
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211532039|gb|FL347052.1|FL347052
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGATTTCCCGACCCTTCGCTCCGACCCACACAGGCG
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCG-TTTCCCGACCCTTCGCTCCGACCCACACAGGCG
EST: gi|71443106|gb|DR824156.1|DR824156
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211378112|gb|FL330003.1|FL330003
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|50337823|gb|CO532949.1|CO532949
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211043460|gb|FL324042.1|FL324042
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|101389514|gb|EB816695.1|EB816695
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211203210|gb|FL341871.1|FL341871
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211526596|gb|FL367655.1|FL367655
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211333000|gb|FL319500.1|FL319500
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211264640|gb|FL311733.1|FL311733
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTYCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211337834|gb|FL344315.1|FL344315
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211095786|gb|FL316217.1|FL316217
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211208019|gb|FL322438.1|FL322438
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211140827|gb|FL324953.1|FL324953
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211442630|gb|FL341621.1|FL341621
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|89758224|gb|DY687488.1|DY687488
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|88758133|gb|DY542274.1|DY542274
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211061706|gb|FL341836.1|FL341836
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|148938688|gb|EC883024.2|EC883024
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|71420010|gb|DR804975.1|DR804975
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211482873|gb|FL313335.1|FL313335
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211412583|gb|FL353839.1|FL353839
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|148989211|gb|EE031705.2|EE031705
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211474786|gb|FL319644.1|FL319644
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|91048124|gb|EB158542.1|EB158542
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|211481012|gb|FL352018.1|FL352018
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
EST: gi|76923558|gb|DV169546.1|DV169546
EST:     TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCAC                         AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT
genomic: TCTCTTGCCGGCCGCCTCCACCGTTCTATCTACCGTCCACCGGCGCCCACgtaacacctc ... tcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatgcaaccgcgagcgcgaagattcttacacccggttccatttcggtttcagAGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG
                         ttcttac  putative branch site (score: 2)
                                      ttccatttc  putative PPT
                        attctta  TA-rich tract