1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtgctcatttctgattactaggtaacaaaactttgagaatttatttgtccatttcttatcactgtcactgggaataaatgtcaacgccgtgttttttagGTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGACCATGCAGCTATGTCTTCCAAAATCCTGATCACCAG
species | Zea mays |
transcript | GRMZM2G111511_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAG GTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGAEST: gi|14242742|gb|BG840544.2|BG840544
genomic: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAGgttcttcctc ... tgttttttagGTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGA
EST: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAG GTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGAEST: gi|211110112|gb|FL269606.1|FL269606
genomic: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAGgttcttcctc ... tgttttttagGTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGA
EST: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAG GTTTTAGCAGGTTTTCTGAATCCAACGGCCGGTACAGTGTATATAAACAGAEST: gi|74238567|gb|DT646481.1|DT646481
genomic: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAGgttcttcctc ... tgttttttagGTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGA
EST: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAG GTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGA
genomic: TCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAGgttcttcctc ... tgttttttagGTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGA
ttgtccatttcttatcactgtcactgggaataaatgtcaacgccgtgttttttagGTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGACCATGCAGCTATGTCTTCCAAAATCCTGATCACCAG
tgtttttt CT-rich tract
atttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgctcatttctgattactaggtaacaaaactttgagaatttatttgtccatttcttatcactgtcactgggaataaatgtcaacgccgtgttttttagGTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGACCATGCAGCTATGTCTTCCAAAATCCTGATCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT