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gtaggggccttctttccaagtctcatacctgtgctctgtgatgaaagaactctgctactgcaacaacgtatgctgattgttttctcttggtgtttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG
species | Zea mays |
transcript | GRMZM2G111138_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGEST: gi|211098820|gb|FL225942.1|FL225942
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGEST: gi|9731238|gb|BE509990.1|BE509990
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGEST: gi|211098821|gb|FL225943.1|FL225943
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGEST: gi|71426094|gb|DR807144.1|DR807144
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGEST: gi|60399740|gb|DN232550.1|DN232550
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGEST: gi|78024478|gb|DV492865.1|DV492865
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGEST: gi|211098823|gb|FL225945.1|FL225945
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGEST: gi|211098819|gb|FL225941.1|FL225941
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGEST: gi|211101290|gb|FL225947.1|FL225947
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
EST: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATNNNNN NNAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
genomic: TGCAGCTTCAACTGATTCCGCGTCAGGAGCACTTAGAGCAACCATGGGGGgtaggggcct ... tttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAG
aactctgctactgcaacaacgtatgctgattgttttctcttggtgtttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG
tgctgat putative branch site (score: 3)
tttgttcc putative PPT
attgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggggccttctttccaagtctcatacctgtgctctgtgatgaaagaactctgctactgcaacaacgtatgctgattgttttctcttggtgtttgttccagGGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC