1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttaaacaatactgtactgtactaaggaaacgctgcctgtgttgacctgcaactacttgtgattattcacttatttgttcgtttgtttttgctggtacagGCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTCATCGGCTACTGCTACCAGGACGAGCACAGGCTTCTCGTGTACGAGTTCA
species | Zea mays |
transcript | GRMZM2G110968_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCAAGCTGCTCGACCTCGAGGGCTCCCAGGGCCACAAGGAGTGGCTG GCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTCEST: gi|91049702|gb|EB160120.1|EB160120
genomic: CCGTCAAGCTGCTCGACCTCGAGGGCTCCCAGGGCCACAAGGAGTGGCTGgtaagcaagt ... gctggtacagGCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTC
EST: CCGTCAAGCTGCTCGACCTCGAGGGCTCCCAGGGCCACAAGGAGTGGCTG GCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTCEST: gi|78089533|gb|DV517907.1|DV517907
genomic: CCGTCAAGCTGCTCGACCTCGAGGGCTCCCAGGGCCACAAGGAGTGGCTGgtaagcaagt ... gctggtacagGCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTC
EST: CCGTCAAGCTGCTCGACCTCGAGGGCTCCCAGGGCCACAAGGAGTGGCTG GCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTCEST: gi|91054554|gb|EB164972.1|EB164972
genomic: CCGTCAAGCTGCTCGACCTCGAGGGCTCCCAGGGCCACAAGGAGTGGCTGgtaagcaagt ... gctggtacagGCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTC
EST: CCGTCAAGCTGCTCGACCTCGAGGGCTCCCAGGGCCACAAGGAGTGGCTG GCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTC
genomic: CCGTCAAGCTGCTCGACCTCGAGGGCTCCCAGGGCCACAAGGAGTGGCTGgtaagcaagt ... gctggtacagGCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTC
cctgcaactacttgtgattattcacttatttgttcgtttgtttttgctggtacagGCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTCATCGGCTACTGCTACCAGGACGAGCACAGGCTTCTCGTGTACGAGTTCA
tttttgct CT-rich tract
attattcacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaaacaatactgtactgtactaaggaaacgctgcctgtgttgacctgcaactacttgtgattattcacttatttgttcgtttgtttttgctggtacagGCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTCATCGGCTACTGCTACCAGGACGAGCACAGGCTTCTCGTGTACGAGTTCA
- - aacaata
- - - - - - tgtactg
- - - - - - - - - - - - - - - cgctgcc
- - - - - - - - - - - - - - - - - - -tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - ctgcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatt