1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgtaaaactcaattaaaattgacgaagagaatgagtgcaccgacagaaactatgttttcgcctgctcactcacgatgttgtctgtcttctggaacgtcagCCGGTCCGCTGCCGAAGCACAACGGCGTCAGCTGGAGGGGCAATTCCTGCATGAAGGATGGCCTCTCCGACAGCACCGTCCGCCGGAGCTTGGTCGGAGG
species | Zea mays |
transcript | GRMZM2G110735_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTACACGCAGGCGCTGCACAAGGCGCTCATGTTCTTCAACGCGCAGCGAT CCGGTCCGCTGCCGAAGCACAACGGCGTCAGCTGGAGGGGCAATTCCTGCAEST: gi|31358262|gb|CD442619.1|CD442619
genomic: GTACACGCAGGCGCTGCACAAGGCGCTCATGTTCTTCAACGCGCAGCGATgtgagtccgt ... ggaacgtcagCCGGTCCGCTGCCGAAGCACAACGGCGTCAGCTGGAGGGGCAATTCCTGCA
EST: GTACACGCAGGCGCTGCACAAGGCGCTCATGTTCTTCAACGCGCAGCGAT CCGGTCCGCTGCCGAAGCACAACGGCGTCAGCTGGAGGGGCAATTCCTGCAEST: gi|149078624|gb|EE167410.2|EE167410
genomic: GTACACGCAGGCGCTGCACAAGGCGCTCATGTTCTTCAACGCGCAGCGATgtgagtccgt ... ggaacgtcagCCGGTCCGCTGCCGAAGCACAACGGCGTCAGCTGGAGGGGCAATTCCTGCA
EST: GTACACGCAGGCGCTGCACAAGGCGCTCATGTTCTTCAACGCGCAGCGAT CCGGTCCGCTGCCGAAGCACAACGGCGTCAGCTGGAGGGGGCAATTCCT
genomic: GTACACGCAGGCGCTGCACAAGGCGCTCATGTTCTTCAACGCGCAGCGATgtgagtccgt ... ggaacgtcagCCGGTCCGCTGCCGAAGCACAACGGCGTCAGCTGGAGGGG-CAATTCCT
gaaactatgttttcgcctgctcactcacgatgttgtctgtcttctggaacgtcagCCGGTCCGCTGCCGAAGCACAACGGCGTCAGCTGGAGGGGCAATTCCTGCATGAAGGATGGCCTCTCCGACAGCACCGTCCGCCGGAGCTTGGTCGGAGG
cactcac putative branch site (score: 1005)
tcttctg putative PPT
tatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtaaaactcaattaaaattgacgaagagaatgagtgcaccgacagaaactatgttttcgcctgctcactcacgatgttgtctgtcttctggaacgtcagCCGGTCCGCTGCCGAAGCACAACGGCGTCAGCTGGAGGGGCAATTCCTGCATGAAGGATGGCCTCTCCGACAGCACCGTCCGCCGGAGCTTGGTCGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - -aactcaa
- - - - - - - - - - - -gaagagaa
- - - - - - - - - - - - - - - - - gtgcacc
- - - - - - - - - - - - - - - - - - - - - acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgttg