1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggaacatatcgaaatccgtgggattggagggatttgtggggggttttctcttctcttttgtgggaattctgggtttttatctgtgcggattctgttgcagGGGACGAGAAGGGAAGGGTTCTTGGGGGGAGAGGGAAGAAGATGGCGCGCAATGCGGTGGACAAGGCGACGTCTATCGATGCGCAGCTGCGGCTGCTGGC
species | Zea mays |
transcript | GRMZM2G110714_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCTCCAGTCCTCCCCCGTCCTGCAGGAGTAAAGCCTGTTCCAGGCGAG GGGACGAGAAGGGAAGGGTTCTTGGGGGGAGAGGGAAGAAGATGGCGCGCA
genomic: CTCCTCCAGTCCTCCCCCGTCCTGCAGGAGTAAAGCCTGTTCCAGGCGAGgtgctttcct ... tctgttgcagGGGACGAGAAGGGAAGGGTTCTTGGGGGGAGAGGGAAGAAGATGGCGCGCA
ttctcttctcttttgtgggaattctgggtttttatctgtgcggattctgttgcagGGGACGAGAAGGGAAGGGTTCTTGGGGGGAGAGGGAAGAAGATGGCGCGCAATGCGGTGGACAAGGCGACGTCTATCGATGCGCAGCTGCGGCTGCTGGC
ttctgtt CT-rich tract
tttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaacatatcgaaatccgtgggattggagggatttgtggggggttttctcttctcttttgtgggaattctgggtttttatctgtgcggattctgttgcagGGGACGAGAAGGGAAGGGTTCTTGGGGGGAGAGGGAAGAAGATGGCGCGCAATGCGGTGGACAAGGCGACGTCTATCGATGCGCAGCTGCGGCTGCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcgg