1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttgaagagttggggttgagtcactccattttaaggctgtagctctgagatttatttgcagatgttctgttctcagcctttggctttgtttacattgcagGTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGATTACAA
species | Zea mays |
transcript | GRMZM2G110398_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCTAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCCGCGCAG GTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGAEST: gi|87152947|gb|DY397736.1|DY397736
genomic: CGTCAAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCCGCGCAGgtgacttgct ... tacattgcagGTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGA
EST: CGTCAAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCCGCGCAG GTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGAEST: gi|60340735|gb|DN207708.1|DN207708
genomic: CGTCAAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCCGCGCAGgtgacttgct ... tacattgcagGTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGA
EST: CGTCAAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCCGCGCAG GTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGAEST: gi|18384468|gb|BM417667.1|BM417667
genomic: CGTCAAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCCGCGCAGgtgacttgct ... tacattgcagGTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGA
EST: CGTCAAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCCGCGCAG GTGTTGGTGGTTACTCTTACTTGTATGACCCATTATGGTGGGCAGGAATGA
genomic: CGTCAAGAAGAAGGGGCTTAAGAAGGCCGGTGCGTCCGGCGTCCGCGCAGgtgacttgct ... tacattgcagGTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGA
tgagatttatttgcagatgttctgttctcagcctttggctttgtttacattgcagGTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGATTACAA
ctttgttt CT-rich tract
tttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaagagttggggttgagtcactccattttaaggctgtagctctgagatttatttgcagatgttctgttctcagcctttggctttgtttacattgcagGTGTTGGTGGTTACTCTTACTTGTATGAACCATTATGGTGGGCAGGAATGATTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - -cactcca
- - - - - - - - - - - - - - - - - -gctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagatg