1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...gtctcttttttatcaagtctgcatatatttcgtaaacgaatacgatggatgttttatataggcttggaactgaacagaaaatctactcaaagtttcacagATTGGTATGAGCTGATCACCCCTGGTTGTGTAGTTCCTTCTGCAATGATTTACTGCACTCACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAA
species | Zea mays |
transcript | GRMZM2G109651_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG ATTGGTATGAGCTGATCACCCCTGGTTGTGTAGTTCCTTCTGCAATGATTTEST: gi|76018273|gb|DT945443.1|DT945443
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacagATTGGTATGAGCTGATCACCCCTGGTTGTGTAGTTCCTTCTGCAATGATTT
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|76018273|gb|DT945443.1|DT945443
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|76018273|gb|DT945443.1|DT945443
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|76018273|gb|DT945443.1|DT945443
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|76018273|gb|DT945443.1|DT945443
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|91051140|gb|EB161558.1|EB161558
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG ATTGGTATGAGCTGATCACCCCTGGGTGTGTAGTTCCTTCTGCAATGATTTEST: gi|93017293|gb|EB642813.1|EB642813
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacagATTGGTATGAGCTGATCACCCCTGGTTGTGTAGTTCCTTCTGCAATGATTT
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|93017293|gb|EB642813.1|EB642813
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|93017293|gb|EB642813.1|EB642813
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|93017293|gb|EB642813.1|EB642813
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|93017293|gb|EB642813.1|EB642813
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG TEST: gi|78027070|gb|DV495457.1|DV495457
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacag-
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGTTTCACAGEST: gi|211495115|gb|FL339938.1|FL339938
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTC---TA--TT---AGgtacgtcacc ... agt
EST: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAG ATTGGTATGAGCTGATCACCCCTGGTTGTGTAGTTTCCTTCTGCAATGATT
genomic: TCGCCAGCGGCAGAGGCGGCAACCCTCGATCCGTGTCAATCCTCTATTAGgtacgtcacc ... agtttcacagATTGGTATGAGCTGATCACCCCTGGTTGTGTAGTT-CCTTCTGCAATGATT
tggatgttttatataggcttggaactgaacagaaaatctactcaaagtttcacagATTGGTATGAGCTGATCACCCCTGGTTGTGTAGTTCCTTCTGCAATGATTTACTGCACTCACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAA
ttttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcttttttatcaagtctgcatatatttcgtaaacgaatacgatggatgttttatataggcttggaactgaacagaaaatctactcaaagtttcacagATTGGTATGAGCTGATCACCCCTGGTTGTGTAGTTCCTTCTGCAATGATTTACTGCACTCACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - gtctgca
- - - - - - - - - - - - - - - - -aaacgaa
- - - - - - - - - - - - - - - - - - - - - - atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgaa