Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatcagtgacttgttactttaatgtttggtttcatctgtagcattgtacaattcagtataccttttttcttataattaatcttttgttaatattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG

Basic information

species Zea mays
transcript GRMZM2G109383_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 1
tcatcagtgacttgttactttaatgtttggtttcatctgtagcattgtacaattcagtataccttttttcttataattaat-cttttgttaatattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG
   |||       || ||   | ||  |   | |  |  | | | |||    |   | | |    |       | ||   | ||  ||| | | ||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||| |||||||||||||  ||  |||||| ||
ggttcaagctaacgtcacaa-actgcctaactcctgcgcttgaaatgttgtgtatggcacattgctcacaacctgatctgtgctactgtaactgttaccagGTTACTGTATTCCAGCAGCCTCATTACCTCCAGAACTTTGTGCAATCCACATTTAATGCCCTTCCTGCCGACAAAGTAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211503092|gb|FL335421.1|FL335421
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211183449|gb|FL327212.1|FL327212
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211163859|gb|FL345453.1|FL345453
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211399579|gb|FL345595.1|FL345595
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|31349456|gb|CD433813.1|CD433813
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|32921738|gb|CF026550.1|CF026550
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCAGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211103216|gb|FL316257.1|FL316257
EST:     CACGCACCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CACGC-CCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|31355827|gb|CD440184.1|CD440184
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|30088269|gb|CB886474.1|CB886474
EST:     TCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: TCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211519065|gb|FL311544.1|FL311544
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|8368954|gb|BE051899.1|BE051899
EST:     TTACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211126281|gb|FL366445.1|FL366445
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211213801|gb|FL354211.1|FL354211
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|67035308|gb|CO463841.1|CO463841
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211198397|gb|FL354123.1|FL354123
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211514341|gb|FL311514.1|FL311514
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211520184|gb|FL353420.1|FL353420
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211038815|gb|FL358195.1|FL358195
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211040491|gb|FL324026.1|FL324026
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211446296|gb|FL306989.1|FL306989
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211354596|gb|FL343940.1|FL343940
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCATCATTCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|60351626|gb|DN218599.1|DN218599
EST:     TCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: TCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211087099|gb|FL367278.1|FL367278
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|6536595|gb|AW224908.1|AW224908
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GT-ACTGNATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149013083|gb|EE042782.2|EE042782
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211016345|gb|FL361191.1|FL361191
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211001599|gb|FL335869.1|FL335869
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|32921512|gb|CF026324.1|CF026324
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|19822139|gb|BQ048163.1|BQ048163
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGC-AGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|148974651|gb|EE025449.2|EE025449
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|148945839|gb|EC891128.2|EC891128
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211056237|gb|FL359926.1|FL359926
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|148951896|gb|EC897671.2|EC897671
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211153939|gb|FL327667.1|FL327667
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|32909658|gb|CF014470.1|CF014470
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|28930952|gb|CB334313.1|CB334313
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211353999|gb|FL313767.1|FL313767
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|31353888|gb|CD438245.1|CD438245
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149109604|gb|EE190283.2|EE190283
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149109221|gb|EE190083.2|EE190083
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211157734|gb|FL360814.1|FL360814
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211149502|gb|FL328552.1|FL328552
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTATCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211088149|gb|FL307534.1|FL307534
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211125281|gb|FL351286.1|FL351286
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149017022|gb|EE045668.2|EE045668
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|67025687|gb|CO454436.1|CO454436
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211133200|gb|FL313078.1|FL313078
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTAGCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|31356494|gb|CD440851.1|CD440851
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|67041650|gb|CO467905.1|CO467905
EST:     AGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: AGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211040466|gb|FL323564.1|FL323564
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|84980113|gb|DW530462.1|DW530462
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|148945380|gb|EC890603.2|EC890603
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211472612|gb|FL331154.1|FL331154
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|20208242|gb|BQ134331.1|BQ134331
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|211101215|gb|FL335616.1|FL335616
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149099504|gb|EE185542.2|EE185542
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
EST: gi|149014023|gb|EE043541.2|EE043541
EST:     CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAG                         GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA
genomic: CCACGCCCTTCGACGGCCAGAAGCCCGGCACCTCCGGCCTCCGCAAGAAGgttcccttgc ... atattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtacaattcagtataccttttttcttataattaatcttttgttaatattaccagGTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG
                                        tgttaat  putative branch site (score: 3)
            tataccttttttctta  TA-rich tract