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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcgagagctattccctttttcagaatttagtaggcattgtattccagtttcctcagaccatcagtatgaggttttgaccgaagtaacttcgctgtgtttagTTCCTTCAAGGTAACTCTGGTCTGTTCTTCACCAATCTTCCAAGGGATGATGTTGAGAG

Basic information

species Zea mays
transcript GRMZM2G109133_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109133_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g01430.1 (Oryza sativa), 3'ss of exon 3
gcgagagctattccctttttcagaatttagtaggcattgtattccagtttcctcagaccatcagtatgaggttttgaccgaagtaacttcgctgtgtttagTTCCTTCAAGGTAACTCTGGTCTGTTCTTCACCAATCTTCCAAGGGATGATGTTGAGAG
       |  || ||||| | |  | || | |   | |  | ||||      ||     |  | |||||| | ||    || |||  ||  |||| |||||||||| |||||| |  |||| |||||||| || ||||||||||| |||||||| |||||
---gtgacattttcctttcttaacacttggcatataatacaatccacaccattcctttga--attatgagctcttacttgatgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG

upper sequence: GRMZM2G109133_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g01420.1 (Oryza sativa), 3'ss of exon 3
gcgagagctattccctttttcagaatttagtaggcattgtattccagtttcctcagaccatcagtatgaggttttgaccgaagtaacttcgctgtgtttagTTCCTTCAAGGTAACTCTGGTCTGTTCTTCACCAATCTTCCAAGGGATGATGTTGAGAG
       |  || ||||| | |  | || | |   | |  | ||||      ||  |  |  | |||||| | ||    || |||  ||  |||| |||||||||| |||||| |  |||| |||||||| || ||||||||||| |||||||| |||||
---gtgacattttcctttcttaacacttggcatataatacaatccacaccattcctatga--attatgagctctttcttgacgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcctcagaccatcagtatgaggttttgaccgaagtaacttcgctgtgtttagTTCCTTCAAGGTAACTCTGGTCTGTTCTTCACCAATCTTCCAAGGGATGATGTTGAGAG
                                  aagtaac  putative branch site (score: 2)
                                        cttcgct  CT-rich tract