Sequence
atgc intronic sequence ATGC exonic sequencegtaccacctctgtattcgtgtgtttcacgctataccctagcaatgggtccttgcggattgttgacccccctcggggtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G108919_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 3'ss of exon 1
---gtaccacctctgt-attcgtgtgttt-cacgctat-accctagcaatgggtcc--ttgcggattgttgacccccctcggggtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
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gtctccctacctccatgatccgcgcatctatggtctatgaacctaaccctacttcgagtagctgactact-accccatttggcttgt-tgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAGGCCGCGGCCCTCCGCGACATGCAGGCCAAGGTCGCCAAGGAGATGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211004051|gb|FL318405.1|FL318405EST: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGASATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST:
gi|89247955|gb|DY619741.1|DY619741EST: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataccctagcaatgggtccttgcggattgttgacccccctcggggtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
tgttgac putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccacctctgtattcgtgtgtttcacgctataccctagcaatgggtccttgcggattgttgacccccctcggggtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG