Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccacctctgtattcgtgtgtttcacgctataccctagcaatgggtccttgcggattgttgacccccctcggggtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG

Basic information

species Zea mays
transcript GRMZM2G108919_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108919_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 3'ss of exon 1
---gtaccacctctgt-attcgtgtgttt-cacgctat-accctagcaatgggtcc--ttgcggattgttgacccccctcggggtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
      | |||||  | || || |  | |     |||| | |||| |  |   ||   | || || |  | |||||  | ||  ||  | ||||| |||||||| ||| |||||||||| | |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
gtctccctacctccatgatccgcgcatctatggtctatgaacctaaccctacttcgagtagctgactact-accccatttggcttgt-tgcagCTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAGGCCGCGGCCCTCCGCGACATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211050414|gb|FL364288.1|FL364288
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211491424|gb|FL310090.1|FL310090
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         CTTCAGGAGCTTGACGAGATGAAGCGCAA-STGAAAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTG-AAGGAGATGGAGGAGGA
EST: gi|211538316|gb|FL356780.1|FL356780
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211406953|gb|FL337667.1|FL337667
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         STTCAGGAGCTTGACGAGATGAAGCGCAA-STGAAGGAGATGGAGGARGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211283212|gb|FL331388.1|FL331388
EST:     TGGACGGCGCTGAGGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211191463|gb|FL364434.1|FL364434
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCYGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211517204|gb|FL332921.1|FL332921
EST:     GGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAACG                         -TTCAGGAGCTTGACGAGATGAAGCGCAA-STGAATGGAGATGGAGGAGG
genomic: GGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-Ggtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAA-GGAGATGGAGGAGG
EST: gi|211067042|gb|FL326738.1|FL326738
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         CTTCAGGAGCTTGACGAGATGAAGCGCAA-STGANAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGA-AGGAGATGGAGGAGGA
EST: gi|211510457|gb|FL354887.1|FL354887
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         STTCAGGAGCTTGACGAGATGAAGCGCAA-STGAAAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTG-AAGGAGATGGAGGAGGA
EST: gi|211378524|gb|FL350958.1|FL350958
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211478350|gb|FL364133.1|FL364133
EST:     GGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAACG                         -TTCAGGAGCTTGACGAGATGAAGCGCAA-STGANAGGAGATGGAGGAGG
genomic: GGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-Ggtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGA-AGGAGATGGAGGAGG
EST: gi|211260950|gb|FL364877.1|FL364877
EST:     TGGACGGCGCTGACGTTGATATAGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211357287|gb|FL353300.1|FL353300
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211210828|gb|FL334782.1|FL334782
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         CTTCAGGAGCTTGACGAGATGAAGCGCAA-STGAAAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTG-AAGGAGATGGAGGAGGA
EST: gi|211264649|gb|FL311742.1|FL311742
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         CTTCAGGAGCTTGATGAGATGAAGCGCAA-STGAAAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTG-AAGGAGATGGAGGAGGA
EST: gi|211165160|gb|FL324137.1|FL324137
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211420489|gb|FL364946.1|FL364946
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCG-CGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211004051|gb|FL318405.1|FL318405
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGASATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|9731848|gb|BE510600.1|BE510600
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAATTGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211150849|gb|FL322008.1|FL322008
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAS                         STTCAGGAGCTTGACGAGATGAAGCGCAA-STGANAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGA-AGGAGATGGAGGAGGA
EST: gi|211276608|gb|FL366596.1|FL366596
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         STTCAGGAGCTTGACGAGATGAAGCGCAA-STGAAAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTG-AAGGAGATGGAGGAGGA
EST: gi|211475946|gb|FL359362.1|FL359362
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|84980134|gb|DW530483.1|DW530483
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211289480|gb|FL348652.1|FL348652
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         CTTCAGGAGCTTGACGAGATGAAGCGCAA-STGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|84976804|gb|DW475226.1|DW475226
EST:     TGAACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211067393|gb|FL344092.1|FL344092
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211179405|gb|FL363893.1|FL363893
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         CGTTCAGGAGCTTGACGAGATGAAGCGCAAS-TGAAAGGAGATGGAGGAGG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagC-TTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAA-GGAGATGGAGGAGG
EST: gi|211295277|gb|FL323384.1|FL323384
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         CTTCAGGAGCTTGACGAGATGAAGCGCAASSTGGAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|60399133|gb|DN231947.1|DN231947
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211125800|gb|FL321191.1|FL321191
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|31351934|gb|CD436291.1|CD436291
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211285004|gb|FL330933.1|FL330933
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211277782|gb|FL330880.1|FL330880
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|31351939|gb|CD436296.1|CD436296
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211333443|gb|FL346031.1|FL346031
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAS                         STTCAGGAGCTTGACGAGATGAAGCGCAA-STGANAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGA-AGGAGATGGAGGAGGA
EST: gi|31350541|gb|CD434898.1|CD434898
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACTCTGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211279695|gb|FL337096.1|FL337096
EST:     TGGAC-G-GCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211475451|gb|FL342194.1|FL342194
EST:     GGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAACG                         -TTCAGGAGCTTGACGAGATGAAGCGCAA-ST-RA-GAGATGGAGGAGGA
genomic: GGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-Ggtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGA
EST: gi|211030847|gb|FL329818.1|FL329818
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACTCGGCG-AM                         STTCAGGAGCTTGACGAGATGAAGCGCAA-STGAAGGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAA-GGAGATGGAGGAGGA
EST: gi|211012344|gb|FL317983.1|FL317983
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAA-                         STTCAGGAGCTTGACGAGATGAAGCGCAA-STGAAAGGGAGATGGAGGAGG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTG-AA-GGAGATGGAGGAGG
EST: gi|211038605|gb|FL345816.1|FL345816
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAG                         CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAG
EST: gi|211310796|gb|FL367440.1|FL367440
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGC-AAA                         CTTTCAGGAGCTTGACGAGATGAAGCGCAA-STGANAGGAGATGGAGGAGG
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagC-TTCAGGAGCTTGACGAGATGAAGCGCAAGCTGA-AGGAGATGGAGGAGG
EST: gi|211391812|gb|FL356647.1|FL356647
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAS                         STTCAGGAGCTTGACGAGATGAAGCGCAAS-TGRNAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGA-AGGAGATGGAGGAGGA
EST: gi|211019206|gb|FL365154.1|FL365154
EST:     TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAS                         STTCAGGAGCTTGACGAGATGAAGCGCAAS-TGAAAGGAGATGGAGGAGGA
genomic: TGGACGGCGCTGACGTTGATATGGCCGCCGCCGGGGACGACGCGGCGAAGgtaccacctc ... gtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAA-GGAGATGGAGGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataccctagcaatgggtccttgcggattgttgacccccctcggggtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG
                            tgttgac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccacctctgtattcgtgtgtttcacgctataccctagcaatgggtccttgcggattgttgacccccctcggggtgcgtacagCTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG