1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catattagcaaatctctcgtgttcaccccagcttaaaaatataagctgtttggtgccgctcgtgtatttaccatgtttttgctactattgattgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG
species | Zea mays |
transcript | GRMZM2G108739_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|37361488|gb|CF602777.1|CF602777
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGTTCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|18649335|gb|BM498154.1|BM498154
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|19058669|gb|BM737336.1|BM737336
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: GGTTGCTCGGATCTTCTTCGGCCCGGTAGGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|18450451|gb|BM428729.1|BM428729
genomic: GGTTGCTCGGATCTTCTTCGGCCCGTTA-GCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|32936153|gb|CF040965.1|CF040965
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGTTCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|32937762|gb|CF042581.1|CF042581
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGTTCTTCTTCGGCCCGGTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|18649482|gb|BM498301.1|BM498301
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|18649277|gb|BM498096.1|BM498096
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|18450400|gb|BM428678.1|BM428678
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCCCCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211120940|gb|FL408170.1|FL408170
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211288445|gb|FL410142.1|FL410142
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|5055707|gb|AI734594.1|AI734594
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|31664378|gb|CD573103.1|CD573103
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGG-TGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211490322|gb|FL377881.1|FL377881
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211132915|gb|FL391880.1|FL391880
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211156337|gb|FL380332.1|FL380332
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|30306470|gb|CD001143.1|CD001143
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGGGCACTATTGAEST: gi|211102481|gb|FL395954.1|FL395954
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCA-CAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|93013476|gb|EB638996.1|EB638996
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211392419|gb|FL378726.1|FL378726
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|19822579|gb|BQ048603.1|BQ048603
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|76929348|gb|DV171972.1|DV171972
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211488685|gb|FL428190.1|FL428190
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211045017|gb|FL382448.1|FL382448
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211474315|gb|FL411624.1|FL411624
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCA-CAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|18650000|gb|BM498819.1|BM498819
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGG-TGCTCGGATCTTCTTCGGCCCG-TAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|18450596|gb|BM428874.1|BM428874
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGGTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|18649234|gb|BM498053.1|BM498053
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|78092543|gb|DV520917.1|DV520917
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|78084624|gb|DV513017.1|DV513017
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211491468|gb|FL425155.1|FL425155
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCA-CAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|19822485|gb|BQ048509.1|BQ048509
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAEST: gi|211201385|gb|FL369966.1|FL369966
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
EST: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCA-CAG GGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
genomic: CGGTTGCTCGGATCTTCTTCGGCCCGTTAGCCGTCGACGAGCACCACCAGgtacgccaac ... attgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGA
ctgtttggtgccgctcgtgtatttaccatgtttttgctactattgattgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG
tattgat putative branch site (score: 62)
tgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catattagcaaatctctcgtgttcaccccagcttaaaaatataagctgtttggtgccgctcgtgtatttaccatgtttttgctactattgattgtgccagGGCAACCAGATACTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - -ccccagc
- - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - -agctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - tggtgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taccatg